Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001202`

染色体: Chr04 坐标: 18449046-18454667 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001202`
名称	SmilChr04G001202
描述	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	18449046 - 18454667 / `+`

ID 对照

NCBI Gene ID	`LOC131023665`
GeneID	`131023665`
locus_tag	`-`
NCBI Name	`LOC131023665`
原始查询	`SmilChr04G001202`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic-like
产物	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase%2C chloroplastic-like
Arabidopsis	`AT2G02500` (ISPD) Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:814779] identity=66.1; qcov=0.934; evalue=8.23e-98; confidence=high
Rice	`Os01g0887100` (OsCMS) - identity=79.1; qcov=0.517; evalue=3.14e-71; confidence=medium
GO	GO:0008299 (isoprenoid biosynthetic process); GO:0050518 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity)
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01128 (IspD); PF12804 (NTP_transf_3)
InterPro	-
eggNOG	-
NR	GeneID:131023665

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057809191.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057809191.1`
3	Nucleus	细胞核	0.00000	`XP_057809191.1`
4	Chromosome	染色体	0.00000	`XP_057809191.1`
5	Centromere	着丝粒	0.00000	`XP_057809191.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:18453830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809191.1

304 aa

152

304

IspD

NTP_transf_3

PF01128 IspD 81-301 aa PF12804 NTP_transf_3 83-171 aa

XP_057809192.1

259 aa

130

259

IspD

PF01128 IspD 128-256 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809191.1`	Pfam	`PF01128`	IspD	Family	81	301	1.5e-55	189.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
`XP_057809191.1`	Pfam	`PF12804`	NTP_transf_3	Domain	83	171	1.6e-08	35.6	MobA-like NTP transferase domain
`XP_057809192.1`	Pfam	`PF01128`	IspD	Family	128	256	2.7e-43	149.0	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953208.1
GTGAGACTCCCTTCTTGCGGTCAAGTCGACTAAGATGTATTAGTATTTTTTGTTCCTCCTCAGCTAGTGAAGTGTAAAATATCCATTCATTCATTCCTTGTTTCATTGAGCGGCTTTTCCGAGGACGAAACAAAGATGTCAACGCTTCAGATTACAAATCTCCCGCCCTCTGCAGCTTCTCCCTCTGTTTCCCCTTCTTCTTTCCCGTTATTTTTGGGTGCAACTTTGGGGCTCCCCACTAAATTCCGCCCCTCATTTGC...

XM_057953209.1
CAAGTCGACTAAGATGTATTAGTATTTTTTGTTCCTCCTCAGCTAGTGAAGTGTAAAATATCCATTCATTCATTCCTTGTTTCATTGAGCGGCTTTTCCGAGGACGAAACAAAGATGTCAACGCTTCAGATTACAAATCTCCCGCCCTCTGCAGCTTCTCCCTCTGTTTCCCCTTCTTCTTTCCCGTTATTTTTGGGTGCAACTTTGGGGCTCCCCACTAAATTCCGCCCCTCATTTGCTTTGACCACCGTATACAATAA...

CDS

2 records

下载 CDS FASTA

LOC131023665
ATGTCAACGCTTCAGATTACAAATCTCCCGCCCTCTGCAGCTTCTCCCTCTGTTTCCCCTTCTTCTTTCCCGTTATTTTTGGGTGCAACTTTGGGGCTCCCCACTAAATTCCGCCCCTCATTTGCTTTGACCACCGTATACAATAATCGAAAGATCGATTCTTTGAAGAACCCTAGATTCTCTAGAATCAGTTGCTCTGCAGGGGGCACAGACACACAAGTAGTGGTCAAAGAGAAGAGTGTATCTGTTATTCTGCTTGC...

Protein

2 records

下载 Protein FASTA

XP_057809191.1
MSTLQITNLPPSAASPSVSPSSFPLFLGATLGLPTKFRPSFALTTVYNNRKIDSLKNPRFSRISCSAGGTDTQVVVKEKSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSFYTFSKMPEVKEIIVVCDPSYQDIFEDARDNIHIDLKFALPGKERQDSVYSGLEEIDLNSELVCIHDSARPLVLTSDVTKVLKDGKRIGAAVLGVPAKATIKEANSESFVVKTLDRKTLWEMQTPQVIEPDLLKKGFEYVNREGLE...

XP_057809192.1
MSTLQITNLPPSAASPSVSPSSFPLFLGATLGLPTKFRPSFALTTVYNNRKIDSLKNPRFSRISCSAGGTDTQVVVKEKSVSVILLAGGKGKRMGASMPKQYLPLLGQPIALYSFYTFSKMPEEIDLNSELVCIHDSARPLVLTSDVTKVLKDGKRIGAAVLGVPAKATIKEANSESFVVKTLDRKTLWEMQTPQVIEPDLLKKGFEYVNREGLEVTDDVSIVEHLKHPVYITEGSYTNIKVTTPDDLLLAERILNPED

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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