当前解析结果
SmilChr04G001203| 统一新 Gene ID | SmilChr04G001203 |
|---|---|
| 名称 | SmilChr04G001203 |
| 描述 | amino acid transporter AVT3C-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 18486454 - 18487071 / - |
| NCBI Gene ID | LOC131023103 |
|---|---|
| GeneID | 131023103 |
| locus_tag | - |
| NCBI Name | LOC131023103 |
| 原始查询 | SmilChr04G001203 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | amino acid transporter AVT3C-like |
| 产物 | amino acid transporter AVT3C-like |
| Arabidopsis | AT2G42005 (AT2G42005)Transmembrane amino acid transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:818801] identity=56; qcov=0.854; evalue=3.33e-50; confidence=medium |
| Rice | Os04g0565500 (OsANT4)- identity=50; qcov=0.78; evalue=1.85e-42; confidence=medium |
| GO | GO:0003333 (amino acid transmembrane transport); GO:0005774 (vacuolar membrane); GO:0015171 (amino acid transmembrane transporter activity) |
| KEGG | smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01490 (Aa_trans) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023103 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057808630.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057808630.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057808630.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057808630.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057808630.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:18486457 |
AT |
A |
1bp_deletion | frameshift_variant | 77 | A11,A14,A16,A18,A21,A22,A23,B1,B100,B103,B106,B107,B108,B109,B11,B125,B13,B134,B137,B140,B15,B18,B2,B21,B23,B28,B30,B32,B38,B46,B47,B48,B50,B52,B54,B57,B6,B62,B64,B66,B68,B7,B73,B74,B78,B80,B81,B84,B9,B90,B92,B96,B97,C12,C16,C20,C29,C30,C31,C36,C38,C44,C49,C53,C54,C56,C58,C60,C64,C65,C71,C81,C84,C85,C87,D7,D8 |
Chr4:18486467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:18486473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr4:18486478 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr4:18486479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B112 |
Chr4:18486496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B87,C59,C78,D9 |
Chr4:18486514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
Chr4:18486581 |
G |
GA |
1bp_insertion | frameshift_variant | 149 | A10,A11,A15,A16,A2,A20,A24,A25,A5,A6,B10,B100,B101,B103,B105,B106,B107,B114,B119,B121,B125,B126,B127,B13,B130,B134,B135,B138,B139,B140,B15,B17,B18,B2,B21,B22,B26,B27,B28,B29,B30,B31,B33,B34,B36,B38,B39,B40,B41,B42,B43,B45,B47,B48,B49,B5,B51,B52,B54,B56,B57,B59,B6,B60,B61,B63,B64,B65,B67,B68,B71,B72,B73,B75,B76,B8,B80,B81,B84,B85,B88,B9,B90,B91,B92,B94,B95,B96,C1,C10,C11,C12,C14,C21,C22,C24,C25,C27,C29,C3,C31,C33,C34,C37,C38,C39,C4,C40,C41,C43,C44,C46,C48,C49,C5,C50,C51,C53,C54,C55,C56,C57,C58,C6,C60,C62,C63,C64,C66,C67,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C79,C8,C83,C86,C87,D1,D3,D4,D6 |
Chr4:18486588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C84 |
Chr4:18486621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr4:18486632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B107,C53,C87 |
Chr4:18486637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B73,B87,C59,C78,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808630.1PF01490
Aa_trans 39-167 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808630.1 |
Pfam | PF01490 |
Aa_trans | Domain | 39 | 167 | 1.3e-19 | 70.9 | Transmembrane amino acid transporter protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。