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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001208

染色体: Chr04 坐标: 18714535-18721749 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001208
名称SmilChr04G001208
描述uncharacterized SmilChr04G001208
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向18714535 - 18721749 / +

ID 对照

NCBI Gene IDLOC131023670
GeneID131023670
locus_tag-
NCBI NameLOC131023670
原始查询SmilChr04G001208

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Beta-glucosidase, GBA2 type family protein [Source:NCBI gene (formerly Entrezgene);Acc:835053]; symbol=AT5G49900; hit=AT5G49900; species=arabidopsis; confidence=high
产物Beta-glucosidase, GBA2 type family protein [Source:NCBI gene (formerly Entrezgene);Acc:835053]; symbol=AT5G49900; hit=AT5G49900; species=arabidopsis; confidence=high
ArabidopsisAT5G49900 (AT5G49900)
Beta-glucosidase, GBA2 type family protein [Source:NCBI gene (formerly Entrezgene);Acc:835053]
identity=66.6; qcov=1.01; evalue=0; confidence=high
RiceOs11g0242100
-
identity=61.5; qcov=0.995; evalue=0; confidence=high
GOGO:0004348 (glucosylceramidase activity); GO:0005975 (carbohydrate metabolic process); GO:0006680 (glucosylceramide catabolic process); GO:0008422 (beta-glucosidase activity); GO:0016020 (membrane)
KEGGsmil00511 (Other glycan degradation - Salvia miltiorrhiza (redroot sage)); smil00600 (Sphingolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04382 (Cornified envelope formation - Salvia miltiorrhiza (redroot sage))
PfamPF04685 (GH116_catalytic); PF12215 (Glyco_hydr_116N)
InterPro-
eggNOG-
NRGeneID:131023670

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 0.80000 XP_057809197.1
2 Cytoplasm 细胞质 0.40000 XP_057809197.1
3 Endoplasmic reticulum 内质网 0.20000 XP_057809197.1
4 Nucleus 细胞核 0.00000 XP_057809197.1
5 Chromosome 染色体 0.00000 XP_057809197.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:18715784 C T EMS_canonical_SNV CDS_variant 1 D10
Chr4:18715813 C T EMS_canonical_SNV CDS_variant 1 C30
Chr4:18716126 G A EMS_canonical_SNV CDS_variant 1 B104
Chr4:18717041 C T EMS_canonical_SNV CDS_variant 3 A16,B83,C59
Chr4:18718095 G A EMS_canonical_SNV CDS_variant 5 B87,C59,C78,C84,D9
Chr4:18718635 C T EMS_canonical_SNV CDS_variant 2 C81,C82
Chr4:18719278 C T EMS_canonical_SNV CDS_variant 2 B35,C67
Chr4:18719747 G A EMS_canonical_SNV CDS_variant 1 B75
Chr4:18720048 GA G 1bp_deletion frameshift_variant 1 B104
Chr4:18720048 GA G 1bp_deletion CDS_variant 1 B104
Chr4:18720053 G A EMS_canonical_SNV CDS_variant 1 B104
Chr4:18720066 G A EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809197.1
949 aa
N
1
474
949
Glyco_hydr_116N
GH116_catalytic
C
PF12215 Glyco_hydr_116N 92-410 aa PF04685 GH116_catalytic 526-886 aa
XP_057809198.1
949 aa
N
1
474
949
Glyco_hydr_116N
GH116_catalytic
C
PF12215 Glyco_hydr_116N 92-410 aa PF04685 GH116_catalytic 526-886 aa
XP_057809199.1
949 aa
N
1
474
949
Glyco_hydr_116N
GH116_catalytic
C
PF12215 Glyco_hydr_116N 92-410 aa PF04685 GH116_catalytic 526-886 aa
XP_057809200.1
838 aa
N
1
419
838
Glyco_hydr_116N
GH116_catalytic
C
PF12215 Glyco_hydr_116N 2-299 aa PF04685 GH116_catalytic 415-775 aa
XP_057809201.1
838 aa
N
1
419
838
Glyco_hydr_116N
GH116_catalytic
C
PF12215 Glyco_hydr_116N 2-299 aa PF04685 GH116_catalytic 415-775 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809197.1 Pfam PF12215 Glyco_hydr_116N Family 92 410 9.8e-105 351.3 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
XP_057809197.1 Pfam PF04685 GH116_catalytic Repeat 526 886 8.3e-161 535.9 Glycosyl-hydrolase family 116, catalytic region
XP_057809198.1 Pfam PF12215 Glyco_hydr_116N Family 92 410 9.8e-105 351.3 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
XP_057809198.1 Pfam PF04685 GH116_catalytic Repeat 526 886 8.3e-161 535.9 Glycosyl-hydrolase family 116, catalytic region
XP_057809199.1 Pfam PF12215 Glyco_hydr_116N Family 92 410 9.8e-105 351.3 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
XP_057809199.1 Pfam PF04685 GH116_catalytic Repeat 526 886 8.3e-161 535.9 Glycosyl-hydrolase family 116, catalytic region
XP_057809200.1 Pfam PF12215 Glyco_hydr_116N Family 2 299 2.8e-90 303.8 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
XP_057809200.1 Pfam PF04685 GH116_catalytic Repeat 415 775 6.2e-161 536.3 Glycosyl-hydrolase family 116, catalytic region
XP_057809201.1 Pfam PF12215 Glyco_hydr_116N Family 2 299 2.8e-90 303.8 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
XP_057809201.1 Pfam PF04685 GH116_catalytic Repeat 415 775 6.2e-161 536.3 Glycosyl-hydrolase family 116, catalytic region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057953215.1
AAGAAAGGTTGACTTTATAACTGATTCATTCAAAACTCAAAAGCTTCAGTTACAAACCAACACAAAATCGTGTTCTGATTTCCACCACATTGCCTGCAAAATAGCATCTGCACTTTCCCAATCAATCCGGAAATATGTCAGATAATGGTCTTGCTATTGGAGAAGGGAAGTCAGTTTCGCATGATGATAAGGTCAAGATTGATCCTGGGACGCCTCCATCTCTGACTTTGAAAAGGACACTGAACACTAAAGATTCTGTC...
XM_057953214.1
GAAAGGTTGACTTTATAACTGATTCATTCAAAACTCAAAAGCTTCAGTTACAAACCAACACAAAATCGTGTTCTGATTTCCACCACATTGCCTGCAAAATAGCATCTGCACTTTCCCAATCAATCCGGTAGTTATTCGCCGTTTCTAAGGAAATATGTCAGATAATGGTCTTGCTATTGGAGAAGGGAAGTCAGTTTCGCATGATGATAAGGTCAAGATTGATCCTGGGACGCCTCCATCTCTGACTTTGAAAAGGACAC...

CDS

5 records

下载 CDS FASTA
LOC131023670
ATGTCAGATAATGGTCTTGCTATTGGAGAAGGGAAGTCAGTTTCGCATGATGATAAGGTCAAGATTGATCCTGGGACGCCTCCATCTCTGACTTTGAAAAGGACACTGAACACTAAAGATTCTGTCCTTACTGAATTTGACCTTACTTTAAAAGAGAAAATCAGTATGGCCCCTATAGGTTATAGGCTATGGAGGCACCTTCGTGAGGAAAAATCCAGAGACAGCGAGGTATTTCTTGATCCTTTTACAAAGCGCCCGAC...
LOC131023670
ATGTCAGATAATGGTCTTGCTATTGGAGAAGGGAAGTCAGTTTCGCATGATGATAAGGTCAAGATTGATCCTGGGACGCCTCCATCTCTGACTTTGAAAAGGACACTGAACACTAAAGATTCTGTCCTTACTGAATTTGACCTTACTTTAAAAGAGAAAATCAGTATGGCCCCTATAGGTTATAGGCTATGGAGGCACCTTCGTGAGGAAAAATCCAGAGACAGCGAGGTATTTCTTGATCCTTTTACAAAGCGCCCGAC...

Protein

5 records

下载 Protein FASTA
XP_057809197.1
MSDNGLAIGEGKSVSHDDKVKIDPGTPPSLTLKRTLNTKDSVLTEFDLTLKEKISMAPIGYRLWRHLREEKSRDSEVFLDPFTKRPTSSCHGVPLGGIGAGSIGRSYKGEFMRWQLFPRICEDEPVMANQFSVFVSRPNGERFSSVLCPKNPEKLKESSASGIGSWDWNLDGRNSTYHALFPRAWTVYNGEPDPDLKIVCRQLSPIIPNNYKDSSFPVAVFTYTLSNLGRTEAKATMLFSWANSVGGESGLSGHHFNSRF...
XP_057809198.1
MSDNGLAIGEGKSVSHDDKVKIDPGTPPSLTLKRTLNTKDSVLTEFDLTLKEKISMAPIGYRLWRHLREEKSRDSEVFLDPFTKRPTSSCHGVPLGGIGAGSIGRSYKGEFMRWQLFPRICEDEPVMANQFSVFVSRPNGERFSSVLCPKNPEKLKESSASGIGSWDWNLDGRNSTYHALFPRAWTVYNGEPDPDLKIVCRQLSPIIPNNYKDSSFPVAVFTYTLSNLGRTEAKATMLFSWANSVGGESGLSGHHFNSRF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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