Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001211`

染色体: Chr04 坐标: 18778790-18793900 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001211`
名称	SmilChr04G001211
描述	uncharacterized protein At5g08430-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	18778790 - 18793900 / `+`

ID 对照

NCBI Gene ID	`LOC131023672`
GeneID	`131023672`
locus_tag	`-`
NCBI Name	`LOC131023672`
原始查询	`SmilChr04G001211`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc ion binding / DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:836490]; symbol=AT5G63700; hit=AT5G63700; species=arabidopsis; confidence=medium
产物	zinc ion binding / DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:836490]; symbol=AT5G63700; hit=AT5G63700; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G63700` (AT5G63700) zinc ion binding / DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:836490] identity=39.5; qcov=0.779; evalue=2.01e-129; confidence=medium
Rice	`Os01g0884500` - identity=35.8; qcov=0.77; evalue=1.08e-106; confidence=medium
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF02201 (SWIB); PF03126 (Plus-3); PF22908 (PHD_NSD); PF25980 (NERD_plant); PF26291 (SWIB_eIF2D)
InterPro	-
eggNOG	-
NR	GeneID:131023672

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809204.1`
2	Chromosome	染色体	0.00000	`XP_057809204.1`
3	Centromere	着丝粒	0.00000	`XP_057809204.1`
4	Chromatin	染色质	0.00000	`XP_057809204.1`
5	Telomere	端粒	0.00000	`XP_057809204.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:18779294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:18780515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:18782942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:18783044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr4:18783140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:18783189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B124,B79
`Chr4:18789475`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C58,C85
`Chr4:18789967`	`C`	`T`	EMS_canonical_SNV	stop_gained	6	B105,B25,B62,B64,B83,C77
`Chr4:18792485`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:18792519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B52,B75
`Chr4:18793366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:18793457`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B106,B66,C79,C80,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809204.1

732 aa

366

732

PHD_NSD

SWIB_eIF2D

SWIB

Plus-3

NERD_plant

PF22908 PHD_NSD 21-66 aa PF26291 SWIB_eIF2D 235-293 aa PF02201 SWIB 247-305 aa PF03126 Plus-3 365-464 aa PF25980 NERD_plant 488-535 aa

XP_057809205.1

732 aa

366

732

PHD_NSD

SWIB_eIF2D

SWIB

Plus-3

NERD_plant

PF22908 PHD_NSD 21-66 aa PF26291 SWIB_eIF2D 235-293 aa PF02201 SWIB 247-305 aa PF03126 Plus-3 365-464 aa PF25980 NERD_plant 488-535 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809204.1`	Pfam	`PF22908`	PHD_NSD	Domain	21	66	8.6e-06	26.7	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
`XP_057809204.1`	Pfam	`PF26291`	SWIB_eIF2D	Domain	235	293	3.6e-08	33.7	eIF2D, SWIB domain
`XP_057809204.1`	Pfam	`PF02201`	SWIB	Domain	247	305	1e-11	45.1	SWIB/MDM2 domain
`XP_057809204.1`	Pfam	`PF03126`	Plus-3	Domain	365	464	2.2e-16	61.1	Plus-3 domain
`XP_057809204.1`	Pfam	`PF25980`	NERD_plant	Domain	488	535	3e-22	78.9	Plant NERD domain
`XP_057809205.1`	Pfam	`PF22908`	PHD_NSD	Domain	21	66	8.6e-06	26.7	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
`XP_057809205.1`	Pfam	`PF26291`	SWIB_eIF2D	Domain	235	293	3.6e-08	33.7	eIF2D, SWIB domain
`XP_057809205.1`	Pfam	`PF02201`	SWIB	Domain	247	305	1e-11	45.1	SWIB/MDM2 domain
`XP_057809205.1`	Pfam	`PF03126`	Plus-3	Domain	365	464	2.2e-16	61.1	Plus-3 domain
`XP_057809205.1`	Pfam	`PF25980`	NERD_plant	Domain	488	535	3e-22	78.9	Plant NERD domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009101467.1
CATAGTTAATCCTATCCTATAAAAATGAAGAGGCAGAGAGAGCCTATTCCTTTCTGAAAATTCTCAAGCTAAACCAATAGCGAAAGCCTTGGGCGATTCCAATTTCCCAAAGGTTTTGTGGTCTTCCAAAATCCCACCTATTAATTGGTCTGACTTTGCTCCTCCTCTCTCTCTCTCTCTCACAAACACACACACACACACTCCTTTACTGTAAAGACGCAAGAAACATGCACGATCAAAAACCCTCCCATCTCCCACAT...

XM_057953221.1
CATAGTTAATCCTATCCTATAAAAATGAAGAGGCAGAGAGAGCCTATTCCTTTCTGAAAATTCTCAAGCTAAACCAATAGCGAAAGCCTTGGGCGATTCCAATTTCCCAAAGGTTTTGTGGTCTTCCAAAATCCCACCTATTAATTGGTCTGACTTTGCTCCTCCTCTCTCTCTCTCTCTCACAAACACACACACACACACTCCTTTACTGTAAAGACGCAAGAAACATGCACGATCAAAAACCCTCCCATCTCCCACAT...

CDS

2 records

下载 CDS FASTA

LOC131023672
ATGAAGAGCAAAGGCAAGAAGAAGAAGACGGTGATAAACAAGGAAGAAGACTCTGAAGACTGGTGCTTCGTTTGCAAAGATGGCGGTGCTCTTCGCATATGTGATCACAAGGAATGTTTAAAATCTTATCACCCTTCTTGTGTTGAAAAGGACGATTCGTTTTTAGAAAGTGAAAGCCGCTGGAATTGTGATTGGCATACTTGCTCCATTTGCCGTAAATCTTCCAACCTTCACTGTTATACCTGCCCAACTGCTGTTTG...

Protein

2 records

下载 Protein FASTA

XP_057809204.1
MKSKGKKKKTVINKEEDSEDWCFVCKDGGALRICDHKECLKSYHPSCVEKDDSFLESESRWNCDWHTCSICRKSSNLHCYTCPTAVCRRCLPRAEFFKVKGQYGFCKLCLHDAILIEEKKDYDSDGNKMDFRDRETREGLFMEYYHIIKEDEGLEPQDLYAAKKGKKTKKLPESSSEEYEEEEEEDEISDYDDAEHVKKCRRTCSQKKSGRKNSGMKTPMRSSKDDFIGWGSRSLIDFLSSIGKRTDKKLSQQDVTSIVN...

XP_057809205.1
MKSKGKKKKTVINKEEDSEDWCFVCKDGGALRICDHKECLKSYHPSCVEKDDSFLESESRWNCDWHTCSICRKSSNLHCYTCPTAVCRRCLPRAEFFKVKGQYGFCKLCLHDAILIEEKKDYDSDGNKMDFRDRETREGLFMEYYHIIKEDEGLEPQDLYAAKKGKKTKKLPESSSEEYEEEEEEDEISDYDDAEHVKKCRRTCSQKKSGRKNSGMKTPMRSSKDDFIGWGSRSLIDFLSSIGKRTDKKLSQQDVTSIVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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