当前解析结果
SmilChr04G001242| 统一新 Gene ID | SmilChr04G001242 |
|---|---|
| 名称 | SmilChr04G001242 |
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 19510934 - 19513879 / + |
| NCBI Gene ID | LOC131023116 |
|---|---|
| GeneID | 131023116 |
| locus_tag | - |
| NCBI Name | LOC131023116 |
| 原始查询 | SmilChr04G001242 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein FAR1-RELATED SEQUENCE 5-like |
| 产物 | protein FAR1-RELATED SEQUENCE 5-like |
| Arabidopsis | AT4G38180 (FRS5)FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=31.8; qcov=0.782; evalue=2.33e-90; confidence=low |
| Rice | Os11g0681300- identity=26.8; qcov=0.957; evalue=1.59e-75; confidence=low |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023116 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808642.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057808642.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057808642.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057808642.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057808642.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:19511451 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr4:19511520 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C23,C55,D10,D11 |
Chr4:19511571 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B45 |
Chr4:19511577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B137,D6 |
Chr4:19511588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C23,C55,D8 |
Chr4:19511656 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | A20,B121,B21 |
Chr4:19511656 |
AG |
A |
1bp_deletion | CDS_variant | 3 | A20,B121,B21 |
Chr4:19511710 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr4:19511725 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A20,B121,B21,C54 |
Chr4:19511736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B121,B21 |
Chr4:19511759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C45,C48,C51,C53 |
Chr4:19511765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808642.1PF03101
FAR1 49-143 aa
PF21056
ZSWIM1-3_RNaseH-like 234-345 aa
PF10551
MULE 265-357 aa
PF04434
SWIM 558-579 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808642.1 |
Pfam | PF03101 |
FAR1 | Domain | 49 | 143 | 4.2e-16 | 60.2 | FAR1 DNA-binding domain |
XP_057808642.1 |
Pfam | PF21056 |
ZSWIM1-3_RNaseH-like | Domain | 234 | 345 | 2.9e-08 | 34.4 | Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain |
XP_057808642.1 |
Pfam | PF10551 |
MULE | Domain | 265 | 357 | 1.2e-26 | 93.6 | MULE transposase domain |
XP_057808642.1 |
Pfam | PF04434 |
SWIM | Domain | 558 | 579 | 0.00045 | 20.4 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。