当前解析结果
SmilChr04G001257| 统一新 Gene ID | SmilChr04G001257 |
|---|---|
| 名称 | SmilChr04G001257 |
| 描述 | uncharacterized SmilChr04G001257 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 19831925 - 19836797 / + |
| NCBI Gene ID | LOC131023683 |
|---|---|
| GeneID | 131023683 |
| locus_tag | - |
| NCBI Name | LOC131023683 |
| 原始查询 | SmilChr04G001257 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819158]; symbol=AT2G45500; hit=AT2G45500; species=arabidopsis; confidence=high |
| 产物 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819158]; symbol=AT2G45500; hit=AT2G45500; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G45500 (AT2G45500)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819158] identity=69; qcov=1.01; evalue=0; confidence=high |
| Rice | Os06g0130000 (LMR)- identity=61.6; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0015630 (microtubule cytoskeleton); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF05496 (RuvB_N); PF07728 (AAA_5); PF17862 (AAA_lid_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023683 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057809223.1 |
| 2 | Cytoskeleton | 细胞骨架 | 0.60000 | XP_057809223.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057809223.1 |
| 4 | Phragmoplast | Phragmoplast | 0.40000 | XP_057809223.1 |
| 5 | Spindle | Spindle | 0.40000 | XP_057809223.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:19832177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:19832186 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | C57 |
Chr4:19832186 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | C57 |
Chr4:19833564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B139,B59,B98 |
Chr4:19833568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C71 |
Chr4:19833590 |
AG |
A |
1bp_deletion | frameshift_variant | 65 | A21,A22,A25,B101,B102,B108,B11,B112,B113,B114,B119,B122,B124,B125,B133,B136,B138,B17,B2,B22,B27,B28,B29,B3,B31,B35,B37,B4,B44,B48,B5,B6,B62,B65,B67,B75,B80,B82,B85,B86,B89,B90,B92,C11,C12,C18,C21,C29,C30,C31,C40,C46,C52,C56,C6,C63,C67,C69,C7,C73,C80,C83,C87,C9,D8 |
Chr4:19833630 |
C |
T |
EMS_canonical_SNV | stop_gained | 70 | A16,A21,A22,A25,B101,B102,B108,B11,B112,B113,B114,B119,B122,B124,B125,B133,B136,B138,B17,B2,B22,B27,B28,B29,B3,B31,B35,B37,B4,B44,B48,B5,B6,B62,B65,B67,B75,B80,B82,B85,B86,B89,B90,B92,C12,C18,C21,C25,C29,C30,C31,C40,C44,C46,C52,C56,C6,C63,C65,C67,C69,C7,C73,C75,C79,C80,C83,C87,C9,D8 |
Chr4:19833691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A16,B130,C84 |
Chr4:19834266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B58 |
Chr4:19836537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809223.1PF05496
RuvB_N 250-369 aa
PF07728
AAA_5 254-375 aa
PF00004
AAA 254-384 aa
PF17862
AAA_lid_3 408-440 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809223.1 |
Pfam | PF05496 |
RuvB_N | Domain | 250 | 369 | 1.3e-06 | 28.9 | Holliday junction DNA helicase RuvB P-loop domain |
XP_057809223.1 |
Pfam | PF07728 |
AAA_5 | Domain | 254 | 375 | 1.8e-05 | 25.5 | AAA domain (dynein-related subfamily) |
XP_057809223.1 |
Pfam | PF00004 |
AAA | Domain | 254 | 384 | 3.1e-41 | 141.6 | ATPase family associated with various cellular activities (AAA) |
XP_057809223.1 |
Pfam | PF17862 |
AAA_lid_3 | Domain | 408 | 440 | 2.4e-12 | 46.9 | AAA+ lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。