当前解析结果
SmilChr04G001265| 统一新 Gene ID | SmilChr04G001265 |
|---|---|
| 名称 | SmilChr04G001265 |
| 描述 | growth-regulating factor 9 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 20070177 - 20072999 / - |
| NCBI Gene ID | LOC131023688 |
|---|---|
| GeneID | 131023688 |
| locus_tag | - |
| NCBI Name | LOC131023688 |
| 原始查询 | SmilChr04G001265 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | growth-regulating factor 9 |
| 产物 | growth-regulating factor 9 |
| Arabidopsis | AT5G53660 (GRF7)growth-regulating factor 7 [Source:NCBI gene (formerly Entrezgene);Acc:835447] identity=75.6; qcov=0.137; evalue=1.92e-17; confidence=weak |
| Rice | Os02g0678800 (GRF10)- identity=60; qcov=0.198; evalue=7.93e-19; confidence=weak |
| GO | GO:0005634 (nucleus); GO:0006351 (DNA-templated transcription); GO:0032502 (developmental process) |
| KEGG | - |
| Pfam | PF08879 (WRC) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023688 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809236.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057809236.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057809236.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057809236.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057809236.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:20070591 |
AG |
A |
1bp_deletion | frameshift_variant | 3 | B124,B2,C49 |
Chr4:20070591 |
AG |
A |
1bp_deletion | CDS_variant | 3 | B124,B2,C49 |
Chr4:20070639 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | C62,C80 |
Chr4:20070639 |
C |
CT |
1bp_insertion | CDS_variant | 2 | C62,C80 |
Chr4:20070767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B79 |
Chr4:20070927 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B96 |
Chr4:20070927 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B96 |
Chr4:20071030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr4:20071059 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr4:20071146 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | D10 |
Chr4:20071146 |
A |
AT |
1bp_insertion | CDS_variant | 1 | D10 |
Chr4:20071195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809236.1PF08879
WRC 116-157 aa
PF08879
WRC 310-343 aa
XP_057809237.1PF08879
WRC 72-113 aa
PF08879
WRC 266-299 aa
XP_057809238.1PF08879
WRC 25-66 aa
PF08879
WRC 219-252 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809236.1 |
Pfam | PF08879 |
WRC | Domain | 116 | 157 | 1.4e-33 | 115.1 | WRC |
XP_057809236.1 |
Pfam | PF08879 |
WRC | Domain | 310 | 343 | 1.4e-33 | 115.1 | WRC |
XP_057809237.1 |
Pfam | PF08879 |
WRC | Domain | 72 | 113 | 7.4e-34 | 115.9 | WRC |
XP_057809237.1 |
Pfam | PF08879 |
WRC | Domain | 266 | 299 | 7.4e-34 | 115.9 | WRC |
XP_057809238.1 |
Pfam | PF08879 |
WRC | Domain | 25 | 66 | 5e-34 | 116.4 | WRC |
XP_057809238.1 |
Pfam | PF08879 |
WRC | Domain | 219 | 252 | 5e-34 | 116.4 | WRC |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。