Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001266`

染色体: Chr04 坐标: 20084045-20087692 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001266`
名称	SmilChr04G001266
描述	transcription factor bHLH160
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	20084045 - 20087692 / `+`

ID 对照

NCBI Gene ID	`LOC131023698`
GeneID	`131023698`
locus_tag	`-`
NCBI Name	`LOC131023698`
原始查询	`SmilChr04G001266`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor bHLH160
产物	transcription factor bHLH160
Arabidopsis	`AT1G71200` (AT1G71200) basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843460] identity=35.4; qcov=0.801; evalue=3.51e-23; confidence=medium
Rice	`Os01g0952800` (OsIRO2) - identity=32.6; qcov=0.774; evalue=4.2e-16; confidence=low
GO	GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity); GO:0090575 (RNA polymerase II transcription regulator complex)
KEGG	-
Pfam	PF00010 (HLH)
InterPro	-
eggNOG	-
NR	GeneID:131023698

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809251.1`
2	Chromosome	染色体	0.00000	`XP_057809251.1`
3	Centromere	着丝粒	0.00000	`XP_057809251.1`
4	Chromatin	染色质	0.00000	`XP_057809251.1`
5	Telomere	端粒	0.00000	`XP_057809251.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:20085030`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,D9
`Chr4:20085118`	`GC`	`G`	1bp_deletion	frameshift_variant	4	A25,B119,B35,C57
`Chr4:20085118`	`GC`	`G`	1bp_deletion	CDS_variant	4	A25,B119,B35,C57
`Chr4:20085122`	`A`	`AG`	1bp_insertion	frameshift_variant	7	B120,B139,B62,B98,C18,C22,C44
`Chr4:20086073`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:20086206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C81,C82
`Chr4:20086381`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	C67
`Chr4:20086381`	`CCT`	`C`	2bp_deletion	CDS_variant	1	C67
`Chr4:20086387`	`AT`	`A`	1bp_deletion	frameshift_variant	74	A10,A11,A19,A2,A24,A4,A6,A7,B101,B107,B109,B112,B119,B12,B127,B13,B131,B132,B134,B137,B14,B15,B21,B24,B26,B29,B32,B36,B39,B40,B45,B46,B47,B50,B52,B53,B54,B56,B6,B68,B85,B86,B90,B94,B95,B96,B97,C1,C12,C2,C25,C30,C31,C32,C34,C38,C39,C4,C40,C49,C51,C56,C57,C60,C61,C63,C67,C68,C74,C77,C86,C9,D2,D8
`Chr4:20086395`	`T`	`TTA`	2bp_insertion	stop_gained,frameshift_variant	25	A10,A13,A22,B1,B110,B114,B118,B120,B18,B23,B25,B74,B85,B87,B94,C13,C28,C43,C49,C50,C58,C78,C8,D5,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809251.1

229 aa

114

229

HLH

PF00010 HLH 71-123 aa

XP_057809252.1

226 aa

113

226

HLH

PF00010 HLH 71-123 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809251.1`	Pfam	`PF00010`	HLH	Domain	71	123	1.8e-11	44.4	Helix-loop-helix DNA-binding domain
`XP_057809252.1`	Pfam	`PF00010`	HLH	Domain	71	123	1.1e-11	45.1	Helix-loop-helix DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953268.1
ATACATTTTTTATTCATGTACTAAGAGGCAACATGTCGACATCATAAGATTAAATTTCTAATTTCTACTAATTATCCTCTTCCCAATTGACTTTTATATTTAATTTCATAATTTTTGTAAGAAAAAAAAAGCATACATAAACAGAGAGATGAAAGGGAAGTATGATTTTTTGATTTGGACATCTCTTCTCTCCTCTCTCATCTTCTCTAGACTGTGTGCATCATCCTCCATCCATTTAGACCTCCTTTCACGTTTATCAG...

XM_057953269.1
TAATTTCATAATTTTTGTAAGAAAAAAAAAGCATACATAAACAGAGAGATGAAAGGGAAGTATGATTTTTTGATTTGGACATCTCTTCTCTCCTCTCTCATCTTCTCTAGACTGTGTGCATCATCCTCCATCCATTTAGACCTCCTTTCACGTTTATCAGCATTTTCCTGTCTTCATTTATCATAAGCCCTCCAGCTTTATTAGTTTTTTTGAGGAACCCTAGAGTGATTTTTGGGTGATAAATTAAATCGGAAACATTA...

CDS

2 records

下载 CDS FASTA

LOC131023698
ATGGAGGAGTGGAGGCATCTGGATGATTCATGGATACTAGAATCTGGTGTGGGCCCATCTCAGGCAAACAATAATGCAATTTCTAGTAGAAGTGGCTCAGGCTCAGCAGCAACACAAGAAAAGAAGAATTTGAAGAAGGCGAAAAGCAACTCAAAATGTAGAAAGAGATTTAGCAGTGGAATTGATGAGAGTGCAGAAGAAGGTGTGAAGAAGCTGGACCACAACGCAAAGGAGAGGATTCGAAGAATGAAGCTTAATGC...

Protein

2 records

下载 Protein FASTA

XP_057809251.1
MEEWRHLDDSWILESGVGPSQANNNAISSRSGSGSAATQEKKNLKKAKSNSKCRKRFSSGIDESAEEGVKKLDHNAKERIRRMKLNASYLALRALLPDSTRSKKKWSAPAIVDRVVKYIPELEKEIEILRSNVNAKEMNASVCMSQVNQQEAIFQVCVARQHQQHSQLTHLLQRLEDEGICINSASALDISHTRICHHLHIQVTTHLHFIYDHHRVVYVLTLPLIFFII

XP_057809252.1
MEEWRHLDDSWILESGVGPSQANNNAISSRSGSGSAATQEKKNLKKAKSNSKCRKRFSSGIDESAEEGVKKLDHNAKERIRRMKLNASYLALRALLPDSTRSKKKWSAPAIVDRVVKYIPELEKEIEILRSNVNAKEMNASVCMSQVNQQEAIFQVCVARQHQQHSQLTHLLQRLEDEGICINSASALDISHTRICHHLHIQTNDTASEAGNRFEELRDKVISWLR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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