Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001268`

染色体: Chr04 坐标: 20140238-20149402 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001268`
名称	SmilChr04G001268
描述	uncharacterized SmilChr04G001268
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	20140238 - 20149402 / `-`

ID 对照

NCBI Gene ID	`LOC131023719`
GeneID	`131023719`
locus_tag	`-`
NCBI Name	`LOC131023719`
原始查询	`SmilChr04G001268`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828875]; symbol=AT4G27640; hit=AT4G27640; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828875]; symbol=AT4G27640; hit=AT4G27640; species=arabidopsis; confidence=high
Arabidopsis	`AT4G27640` (AT4G27640) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828875] identity=77.8; qcov=1; evalue=0; confidence=high
Rice	`Os03g0261900` - identity=67; qcov=0.309; evalue=1.41e-153; confidence=low
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006606 (protein import into nucleus); GO:0008139 (nuclear localization sequence binding); GO:0031267 (small GTPase binding); GO:0061608 (nuclear import signal receptor activity)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF02985 (HEAT); PF03810 (IBN_N); PF13513 (HEAT_EZ); PF24714 (TOR1L1_N); PF25574 (TPR_IMB1); PF25780 (TPR_IPO5)
InterPro	-
eggNOG	-
NR	GeneID:131023719

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809262.1`
2	Cytoplasm	细胞质	1.00000	`XP_057809262.1`
3	Cytosol	细胞质基质	0.80000	`XP_057809262.1`
4	Nucleoplasm	核质	0.60000	`XP_057809262.1`
5	Nucleus membrane	核膜	0.40000	`XP_057809262.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:20141745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B121,B70,B81,C65
`Chr4:20142990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:20143314`	`GC`	`G`	1bp_deletion	frameshift_variant	114	A1,A11,A14,A15,A16,A18,A19,A20,A23,A4,A6,A8,A9,B1,B100,B101,B104,B105,B107,B108,B110,B112,B113,B117,B122,B125,B130,B134,B135,B136,B138,B18,B19,B2,B20,B22,B24,B28,B31,B34,B35,B37,B4,B44,B45,B49,B5,B52,B55,B62,B65,B66,B7,B71,B72,B74,B75,B78,B79,B8,B80,B83,B89,B9,B90,B92,B93,B97,B99,C10,C11,C15,C17,C19,C20,C23,C28,C3,C30,C31,C35,C38,C39,C40,C44,C45,C46,C52,C53,C54,C56,C58,C59,C6,C60,C62,C64,C66,C7,C72,C74,C75,C76,C8,C80,C81,C83,C85,C87,C9,D1,D10,D11,D2
`Chr4:20143358`	`TTA`	`T`	2bp_deletion	frameshift_variant	2	D10,D9
`Chr4:20143358`	`TTA`	`T`	2bp_deletion	CDS_variant	2	D10,D9
`Chr4:20144966`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr4:20145270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B108,B11
`Chr4:20145783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr4:20146001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B25,C84
`Chr4:20146329`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr4:20146538`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C40
`Chr4:20146538`	`CA`	`C`	1bp_deletion	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809262.1

1049 aa

524

1049

IBN_N

TPR_IPO5

TOR1L1_N

HEAT_EZ

HEAT

TPR_IMB1

HEAT

PF03810 IBN_N 23-87 aa PF25780 TPR_IPO5 93-251 aa PF24714 TOR1L1_N 317-534 aa PF13513 HEAT_EZ 352-405 aa PF02985 HEAT 380-409 aa PF25574 TPR_IMB1 389-513 aa PF02985 HEAT 420-449 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809262.1`	Pfam	`PF03810`	IBN_N	Repeat	23	87	1.1e-15	58.1	Importin-beta N-terminal domain
`XP_057809262.1`	Pfam	`PF25780`	TPR_IPO5	Repeat	93	251	4e-43	148.2	IPO5-like, TPR repeats
`XP_057809262.1`	Pfam	`PF24714`	TOR1L1_N	Repeat	317	534	3.1e-20	73.4	TORTIFOLIA1 N-terminal
`XP_057809262.1`	Pfam	`PF13513`	HEAT_EZ	Repeat	352	405	6.9e-26	90.9	HEAT-like repeat
`XP_057809262.1`	Pfam	`PF02985`	HEAT	Repeat	380	409	5e-25	85.9	HEAT repeat
`XP_057809262.1`	Pfam	`PF25574`	TPR_IMB1	Repeat	389	513	3.2e-26	92.7	Importin subunit beta-1-like, TPR repeats
`XP_057809262.1`	Pfam	`PF02985`	HEAT	Repeat	420	449	5e-25	85.9	HEAT repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953279.1
CAATTCTCACTTGTCAGCGAAAAGCTAAAACAGACACCCGCCGCCGTTGCTCCTTCCTTGTATATAAAGGAAAGGGAAAAACAAAGGAAGTTAGGGAACCCTAGCCCCCTTCCTCTCTCTCACGCACCAAACACGCAGTCGACCAATGGCGCAGTCCCTGGAGCTTCTGCTGATCCAGTTCCTGATGCCGGACAACGACGCCCGGCGCCAGGCCGAGGATCAGATTAAGCGGTTGGCCAAGGACCCGCAGGTGGTGCCGG...

CDS

1 records

下载 CDS FASTA

LOC131023719
ATGGCGCAGTCCCTGGAGCTTCTGCTGATCCAGTTCCTGATGCCGGACAACGACGCCCGGCGCCAGGCCGAGGATCAGATTAAGCGGTTGGCCAAGGACCCGCAGGTGGTGCCGGCGCTCGTCCACCACCTTCGCACCGCCAAGACCCCCAACGTCCGCCAGCTCGCCGCCGTTCTCCTCCGCAAGAAGATTACCGGCCATTGGGGCAAGCTGTCGCCGCAGCTCCGCCAGCTAGTCAAACAATCTCTCATCGAGAGCAT...

Protein

1 records

下载 Protein FASTA

XP_057809262.1
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVHHLRTAKTPNVRQLAAVLLRKKITGHWGKLSPQLRQLVKQSLIESITVEHSPPVRRASANVVSIIAKYAVPAGEWSDLLPFLFQCSQSAQEEHREVALILFSSLTETIGNSFRPYFADLQALLLKCLQDETSNRVRVAALKAVGSFLEFTHDETEVIKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKTIVQFSLEVCSSPN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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