Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001273`

染色体: Chr04 坐标: 20245489-20250774 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001273`
名称	SmilChr04G001273
描述	kinetochore protein NUF2 homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	20245489 - 20250774 / `-`

ID 对照

NCBI Gene ID	`LOC131021078`
GeneID	`131021078`
locus_tag	`-`
NCBI Name	`LOC131021078`
原始查询	`SmilChr04G001273`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	kinetochore protein NUF2 homolog
产物	kinetochore protein NUF2 homolog
Arabidopsis	`AT1G61000` (AT1G61000) kinetochore protein [Source:NCBI gene (formerly Entrezgene);Acc:842392] identity=47.4; qcov=0.976; evalue=3.73e-135; confidence=high
Rice	`Os03g0577100` - identity=35.4; qcov=0.98; evalue=1.25e-77; confidence=medium
GO	GO:0000776 (kinetochore); GO:0007052 (mitotic spindle organization); GO:0031262 (Ndc80 complex); GO:0044877 (protein-containing complex binding); GO:0045132 (meiotic chromosome segregation); GO:0051315 (attachment of mitotic spindle microtubules to kinetochore); GO:0051383 (kinetochore organization)
KEGG	-
Pfam	PF03800 (Nuf2)
InterPro	-
eggNOG	-
NR	GeneID:131021078

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chromosome	染色体	1.00000	`XP_057806151.1`
2	Nucleus	细胞核	1.00000	`XP_057806152.1`
3	Centromere	着丝粒	1.00000	`XP_057806152.1`
4	Spindle	Spindle	0.40000	`XP_057806151.1`
5	Nucleoplasm	核质	0.20000	`XP_057806152.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:20246464`	`TCA`	`T`	2bp_deletion	frameshift_variant	3	B103,B25,C84
`Chr4:20246464`	`TCA`	`T`	2bp_deletion	CDS_variant	3	B103,B25,C84
`Chr4:20246506`	`AAT`	`A`	2bp_deletion	frameshift_variant	3	B131,B58,C67
`Chr4:20246506`	`AAT`	`A`	2bp_deletion	CDS_variant	3	B131,B58,C67
`Chr4:20246622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B25,C84
`Chr4:20246878`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B118,B132,B73
`Chr4:20247035`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B103,B25,C84
`Chr4:20247089`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:20247927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B25,C84
`Chr4:20248892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B128

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806151.1

477 aa

238

477

Nuf2

PF03800 Nuf2 3-153 aa

XP_057806152.1

450 aa

225

450

Nuf2

PF03800 Nuf2 3-153 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806151.1`	Pfam	`PF03800`	Nuf2	Domain	3	153	5.8e-34	118.1	Nuf2 family
`XP_057806152.1`	Pfam	`PF03800`	Nuf2	Domain	3	153	5.2e-34	118.3	Nuf2 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950169.1
GCTAGTAGGGACGGAGTAGTTGCAAAAACAAATTTAAATCCACATTCTAGAAGAAGCGGGAAAAACCCCGCCCCCGACCGTCTCTCCCGGTGCACAACCACTAGATCTTCTGAATGCACTTCTGAATTTCAATTTGAACAGTTGAATTGTGCTACAGATTTCCAATCACATCACACCATAATCGCTGCCGCTCTAAACGCAAACAGTTGGTGTAACGAAGGAGAAATTCTGGTAAGTAATGTCGAAATTCGATTACCCCA...

XM_057950168.1
AAATTTAAATCCACATTCTAGAAGAAGCGGGAAAAACCCCGCCCCCGACCGTCTCTCCCGGTGCACAACCACTAGATCTTCTGAATGCACTTCTGAATTTCAATTTGAACAGTTGAATTGTGCTACAGATTTCCAATCACATCACACCATAATCGCTGCCGCTCTAAACGCAAACAGTTGGTGTAACGAAGGAGAAATTCTGGTAAGTAATGTCGAAATTCGATTACCCCAGGCTTCCCCGCCACGACATCGTCGTGGTA...

CDS

2 records

下载 CDS FASTA

LOC131021078
ATGTCGAAATTCGATTACCCCAGGCTTCCCCGCCACGACATCGTCGTGGTACTGGCGGAGTCCCAGATCGCCGCCGTGTCGGAGGCCGACCTCCACCGCCCCGACCCCGACTTCATCTGCAAACTCTATTCTCATATACTCATCTATATGGACATTCTCAAGGACGATGAGGAGCAGATGGAATTCGAGGCGCTGGAGCATCTTGAAAACCCCGAACACCACATGCACTCGGTTCGGATCATGAATTTGTTCGTCAAACT...

Protein

2 records

下载 Protein FASTA

XP_057806151.1
MSKFDYPRLPRHDIVVVLAESQIAAVSEADLHRPDPDFICKLYSHILIYMDILKDDEEQMEFEALEHLENPEHHMHSVRIMNLFVKLRQLLAAIRCPKSFTPKDLIKPDPDRTECFLGALLNFHLHRHAKMEQLKPVFDDLEHFEQQKLAAEARILQLKAEIAELEELREKELPLVQEVSFKIKELHQTVDELNKHQATLRTTIKQLKEKGKETDEKISNAEFALVQSVQENASLRSKIVQSPDKLQRALEEKKLALAEA...

XP_057806152.1
MSKFDYPRLPRHDIVVVLAESQIAAVSEADLHRPDPDFICKLYSHILIYMDILKDDEEQMEFEALEHLENPEHHMHSVRIMNLFVKLRQLLAAIRCPKSFTPKDLIKPDPDRTECFLGALLNFHLHRHAKMEQLKPVFDDLEHFEQQKLAAEARILQLKAEIAELEELREKELPLVQEVSFKIKELHQTVDELNKHQATLRTTIKQLKEKGKETDEKISNAEFALVQSVQENASLRSKIVQSPDKLQRALEEKKLALAEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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