当前解析结果
SmilChr04G001280| 统一新 Gene ID | SmilChr04G001280 |
|---|---|
| 名称 | SmilChr04G001280 |
| 描述 | ankyrin repeat domain-containing protein 2B-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 20373181 - 20378522 / - |
| NCBI Gene ID | LOC131020094 |
|---|---|
| GeneID | 131020094 |
| locus_tag | - |
| NCBI Name | LOC131020094 |
| 原始查询 | SmilChr04G001280 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ankyrin repeat domain-containing protein 2B-like |
| 产物 | ankyrin repeat domain-containing protein 2B-like |
| Arabidopsis | AT2G17390 (AKR2B)ankyrin repeat-containing 2B [Source:NCBI gene (formerly Entrezgene);Acc:816246] identity=61.8; qcov=1; evalue=3.35e-150; confidence=high |
| Rice | Os09g0513000 (OsBIANK1)- identity=71.1; qcov=0.881; evalue=9.56e-159; confidence=high |
| GO | GO:0005515 (protein binding); GO:0009707 (chloroplast outer membrane); GO:0030941 (chloroplast targeting sequence receptor activity); GO:0045036 (protein targeting to chloroplast) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF17830 (STI1-HOP_DP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020094 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057804737.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057804737.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804737.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804737.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804737.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:20373510 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr4:20373736 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:20373821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr4:20374430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:20374431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr4:20376899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr4:20377519 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,B58 |
Chr4:20378088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr4:20378091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B58 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804737.1PF17830
STI1-HOP_DP 168-211 aa
PF12796
Ank_2 236-298 aa
PF12796
Ank_2 242-332 aa
PF00023
Ank 270-301 aa
PF13637
Ank_4 280-323 aa
PF13857
Ank_5 289-343 aa
PF12796
Ank_2 294-355 aa
PF13606
Ank_3 303-329 aa
PF00023
Ank 303-333 aa
PF13637
Ank_4 307-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804737.1 |
Pfam | PF17830 |
STI1-HOP_DP | Domain | 168 | 211 | 2.1e-12 | 47.5 | STI1/HOP, DP domain |
XP_057804737.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 236 | 298 | 3.7e-36 | 124.3 | Ankyrin repeats (3 copies) |
XP_057804737.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 242 | 332 | 3.7e-36 | 124.3 | Ankyrin repeats (3 copies) |
XP_057804737.1 |
Pfam | PF00023 |
Ank | Repeat | 270 | 301 | 1.5e-18 | 66.6 | Ankyrin repeat |
XP_057804737.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 280 | 323 | 1.1e-18 | 67.6 | Ankyrin repeats (many copies) |
XP_057804737.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 289 | 343 | 1.4e-14 | 54.7 | Ankyrin repeats (many copies) |
XP_057804737.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 294 | 355 | 3.7e-36 | 124.3 | Ankyrin repeats (3 copies) |
XP_057804737.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 303 | 329 | 1.4e-11 | 44.1 | Ankyrin repeat |
XP_057804737.1 |
Pfam | PF00023 |
Ank | Repeat | 303 | 333 | 1.5e-18 | 66.6 | Ankyrin repeat |
XP_057804737.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 307 | 355 | 1.1e-18 | 67.6 | Ankyrin repeats (many copies) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。