Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001286`

染色体: Chr04 坐标: 20506064-20515359 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001286`
名称	SmilChr04G001286
描述	formin-like protein 7
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	20506064 - 20515359 / `+`

ID 对照

NCBI Gene ID	`LOC131021072`
GeneID	`131021072`
locus_tag	`-`
NCBI Name	`LOC131021072`
原始查询	`SmilChr04G001286`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	formin-like protein 7
产物	formin-like protein 7
Arabidopsis	`AT1G10790` (AT1G10790) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:837622] identity=40.2; qcov=0.653; evalue=2.11e-60; confidence=medium
Rice	`Os01g0938600` - identity=39.3; qcov=0.71; evalue=8.42e-64; confidence=medium
GO	-
KEGG	-
Pfam	PF23041 (DUF7036)
InterPro	-
eggNOG	-
NR	GeneID:131021072

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057806135.1`
2	Nucleus	细胞核	0.00000	`XP_057806135.1`
3	Chromosome	染色体	0.00000	`XP_057806135.1`
4	Centromere	着丝粒	0.00000	`XP_057806135.1`
5	Chromatin	染色质	0.00000	`XP_057806135.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:20506434`	`C`	`T`	EMS_canonical_SNV	stop_gained	5	B120,B58,B62,C18,C44
`Chr4:20506434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B120,B58,B62,C18,C44
`Chr4:20506514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B2,C3
`Chr4:20506552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr4:20506559`	`C`	`CTA`	2bp_insertion	frameshift_variant	7	B31,B64,B65,C45,C50,C79,C8
`Chr4:20506560`	`T`	`TAA`	2bp_insertion	stop_gained,frameshift_variant	1	C81
`Chr4:20506560`	`T`	`TAA`	2bp_insertion	CDS_variant	1	C81
`Chr4:20506561`	`G`	`A`	EMS_canonical_SNV	stop_gained	101	A1,A14,A15,A19,A22,A5,A7,B10,B100,B102,B108,B109,B112,B115,B117,B119,B120,B125,B129,B13,B132,B136,B139,B14,B15,B18,B19,B22,B23,B26,B27,B29,B3,B30,B34,B38,B39,B40,B42,B43,B49,B56,B57,B58,B61,B62,B67,B68,B69,B70,B72,B73,B74,B78,B8,B81,B83,B84,B88,B9,B94,C10,C11,C13,C2,C20,C21,C22,C23,C24,C27,C28,C29,C30,C37,C39,C41,C43,C44,C47,C48,C49,C55,C56,C59,C64,C65,C66,C68,C69,C7,C75,C76,C82,C84,C85,D1,D11,D3,D4,D9
`Chr4:20506564`	`TTC`	`T`	2bp_deletion	frameshift_variant	49	A10,A13,A14,A2,A25,A4,A6,A7,B1,B102,B109,B112,B12,B121,B126,B135,B138,B140,B2,B31,B36,B37,B47,B5,B51,B56,B63,B79,B83,B85,B96,B97,C16,C18,C21,C38,C4,C40,C54,C56,C6,C63,C67,C71,C73,C83,C87,D1,D11
`Chr4:20506619`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B23,B70
`Chr4:20508123`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C81
`Chr4:20508123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806135.1

500 aa

250

500

DUF7036

PF23041 DUF7036 82-179 aa PF23041 DUF7036 209-299 aa

XP_057806136.1

487 aa

244

487

DUF7036

PF23041 DUF7036 82-179 aa PF23041 DUF7036 209-299 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806135.1`	Pfam	`PF23041`	DUF7036	Domain	82	179	8.2e-49	164.9	Domain of unknown function (DUF7036)
`XP_057806135.1`	Pfam	`PF23041`	DUF7036	Domain	209	299	8.2e-49	164.9	Domain of unknown function (DUF7036)
`XP_057806136.1`	Pfam	`PF23041`	DUF7036	Domain	82	179	7.7e-49	164.9	Domain of unknown function (DUF7036)
`XP_057806136.1`	Pfam	`PF23041`	DUF7036	Domain	209	299	7.7e-49	164.9	Domain of unknown function (DUF7036)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950153.1
GGGAGTATTAGATAAGCAATGAGTTGAAAAAGGAAAAGCATTTTGATTGAGTGCGTTTAATGTTTATGCGCGTAAGGAGATGGAGAGAGAGAGAGCATTTGTTCGGCCAGCACACTTGTCCCTCTCAAACTTGTCTCCACACCTTCTAGAGAGAGAAACATAGAGTGGGAGTGAGCGAGAGCGACAGAGAGAGAAACCGAATCAAGACAAACCCCATCCACTCCCGTTCCAGTACGTGCACGCTGCACCGATACATACAC...

XM_057950152.1
GCAATGAGTTGAAAAAGGAAAAGCATTTTGATTGAGTGCGTTTAATGTTTATGCGCGTAAGGAGATGGAGAGAGAGAGAGCATTTGTTCGGCCAGCACACTTGTCCCTCTCAAACTTGTCTCCACACCTTCTAGAGAGAGAAACATAGAGTGGGAGTGAGCGAGAGCGACAGAGAGAGAAACCGAATCAAGACAAACCCCATCCACTCCCGTTCCAGTACGTGCACGCTGCACCGATACATACACGCTCTCTAGAGGGAG...

CDS

2 records

下载 CDS FASTA

LOC131021072
ATGGGGAAGGCCGATAATCATCAACTGCCAGTTGTGCAGCAGCCCCGTGGCAGTTCTAGAACCTTCCTCTGCCAGAGATGTGCGGTGGGAGCTTCCAGACTCTTCAGCTTCAAATGCGCCGTAGTTTTGATGCTCAGTGTCGCCGCTTTCTTCTCTGCATTTTTCTGGCTTCTTCCTCTTCGATACAAGCAGCCTGGGTTTGATGCTAAAAGCTCCATCAAGCTCAGTGCAACTGTTCAATCATATTTCCAGCTTCAAAA...

Protein

2 records

下载 Protein FASTA

XP_057806135.1
MGKADNHQLPVVQQPRGSSRTFLCQRCAVGASRLFSFKCAVVLMLSVAAFFSAFFWLLPLRYKQPGFDAKSSIKLSATVQSYFQLQKPISELIPYISRLEYDVNEEIGVPSLKVAVLSMHQADLSNWNSLSNWTDVLLGFLPDPINSAPNPVALSLLKSSLIDLFLQQYNLTLTSTIFGEPSSFEILKVPGGITIIPERTPLLSLPLVNFTLNSSIYDIKENLPELKEQLKLGLHLMPNEMVYIQVTNKHGSTKDPPVMV...

XP_057806136.1
MGKADNHQLPVVQQPRGSSRTFLCQRCAVGASRLFSFKCAVVLMLSVAAFFSAFFWLLPLRYKQPGFDAKSSIKLSATVQSYFQLQKPISELIPYISRLEYDVNEEIGVPSLKVAVLSMHQADLSNWNSLSNWTDVLLGFLPDPINSAPNPVALSLLKSSLIDLFLQQYNLTLTSTIFGEPSSFEILKVPGGITIIPERTPLLSLPLVNFTLNSSIYDIKENLPELKEQLKLGLHLMPNEMVYIQVTNKHGSTKDPPVMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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