Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001293`

染色体: Chr04 坐标: 20589081-20594887 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001293`
名称	SmilChr04G001293
描述	probable E3 ubiquitin-protein ligase RHC1A
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	20589081 - 20594887 / `-`

ID 对照

NCBI Gene ID	`LOC131023973`
GeneID	`131023973`
locus_tag	`-`
NCBI Name	`LOC131023973`
原始查询	`SmilChr04G001293`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase RHC1A
产物	probable E3 ubiquitin-protein ligase RHC1A
Arabidopsis	`AT1G68180` (AT1G68180) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843146] identity=36.1; qcov=0.722; evalue=5.31e-31; confidence=medium
Rice	`Os02g0767600` - identity=47.1; qcov=0.299; evalue=1.78e-21; confidence=weak
GO	GO:0005737 (cytoplasm); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131023973

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057809621.1`
2	Cytosol	细胞质基质	0.60000	`XP_057809621.1`
3	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057809621.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057809621.1`
5	Lipid droplet	脂滴	0.20000	`XP_057809621.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:20593824`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr4:20593917`	`AGC`	`A`	2bp_deletion	frameshift_variant	81	A11,A15,A19,A2,A20,A24,A5,A6,A7,B100,B101,B103,B106,B107,B112,B119,B12,B121,B127,B13,B130,B133,B134,B135,B137,B138,B139,B15,B16,B17,B26,B29,B30,B32,B33,B38,B39,B40,B45,B48,B5,B50,B52,B56,B57,B6,B64,B68,B76,B86,B88,B9,B94,B96,C1,C12,C14,C22,C24,C25,C33,C34,C37,C38,C4,C40,C49,C51,C54,C56,C57,C60,C63,C64,C66,C74,C77,C79,C86,D1,D2
`Chr4:20593944`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C16,C62,D3
`Chr4:20594119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr4:20594187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:20594190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:20594345`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:20594391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B121,B70,C65,C67
`Chr4:20594403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B70,C65,C67
`Chr4:20594411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B59,B67,C21
`Chr4:20594588`	`GCA`	`G`	2bp_deletion	frameshift_variant	2	B103,C84
`Chr4:20594588`	`GCA`	`G`	2bp_deletion	CDS_variant	2	B103,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809621.1

284 aa

142

284

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF17123 zf-RING_11 157-184 aa PF13445 zf-RING_UBOX 157-195 aa PF00097 zf-C3HC4 157-197 aa PF13923 zf-C3HC4_2 157-197 aa PF13639 zf-RING_2 157-198 aa

XP_057809623.1

284 aa

142

284

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF17123 zf-RING_11 157-184 aa PF13445 zf-RING_UBOX 157-195 aa PF00097 zf-C3HC4 157-197 aa PF13923 zf-C3HC4_2 157-197 aa PF13639 zf-RING_2 157-198 aa

XP_057809624.1

284 aa

142

284

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF17123 zf-RING_11 157-184 aa PF13445 zf-RING_UBOX 157-195 aa PF00097 zf-C3HC4 157-197 aa PF13923 zf-C3HC4_2 157-197 aa PF13639 zf-RING_2 157-198 aa

XP_057809625.1

284 aa

142

284

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF17123 zf-RING_11 157-184 aa PF13445 zf-RING_UBOX 157-195 aa PF00097 zf-C3HC4 157-197 aa PF13923 zf-C3HC4_2 157-197 aa PF13639 zf-RING_2 157-198 aa

XP_057809626.1

284 aa

142

284

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF17123 zf-RING_11 157-184 aa PF13445 zf-RING_UBOX 157-195 aa PF00097 zf-C3HC4 157-197 aa PF13923 zf-C3HC4_2 157-197 aa PF13639 zf-RING_2 157-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809621.1`	Pfam	`PF17123`	zf-RING_11	Domain	157	184	9.1e-08	32.4	RING-like zinc finger
`XP_057809621.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	157	195	3.7e-06	27.5	RING-type zinc-finger
`XP_057809621.1`	Pfam	`PF00097`	zf-C3HC4	Domain	157	197	2.8e-06	27.8	Zinc finger, C3HC4 type (RING finger)
`XP_057809621.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	157	197	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057809621.1`	Pfam	`PF13639`	zf-RING_2	Domain	157	198	1.2e-12	48.6	Ring finger domain
`XP_057809623.1`	Pfam	`PF17123`	zf-RING_11	Domain	157	184	9.1e-08	32.4	RING-like zinc finger
`XP_057809623.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	157	195	3.7e-06	27.5	RING-type zinc-finger
`XP_057809623.1`	Pfam	`PF00097`	zf-C3HC4	Domain	157	197	2.8e-06	27.8	Zinc finger, C3HC4 type (RING finger)
`XP_057809623.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	157	197	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057809623.1`	Pfam	`PF13639`	zf-RING_2	Domain	157	198	1.2e-12	48.6	Ring finger domain
`XP_057809624.1`	Pfam	`PF17123`	zf-RING_11	Domain	157	184	9.1e-08	32.4	RING-like zinc finger
`XP_057809624.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	157	195	3.7e-06	27.5	RING-type zinc-finger
`XP_057809624.1`	Pfam	`PF00097`	zf-C3HC4	Domain	157	197	2.8e-06	27.8	Zinc finger, C3HC4 type (RING finger)
`XP_057809624.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	157	197	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057809624.1`	Pfam	`PF13639`	zf-RING_2	Domain	157	198	1.2e-12	48.6	Ring finger domain
`XP_057809625.1`	Pfam	`PF17123`	zf-RING_11	Domain	157	184	9.1e-08	32.4	RING-like zinc finger
`XP_057809625.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	157	195	3.7e-06	27.5	RING-type zinc-finger
`XP_057809625.1`	Pfam	`PF00097`	zf-C3HC4	Domain	157	197	2.8e-06	27.8	Zinc finger, C3HC4 type (RING finger)
`XP_057809625.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	157	197	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057809625.1`	Pfam	`PF13639`	zf-RING_2	Domain	157	198	1.2e-12	48.6	Ring finger domain
`XP_057809626.1`	Pfam	`PF17123`	zf-RING_11	Domain	157	184	9.1e-08	32.4	RING-like zinc finger
`XP_057809626.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	157	195	3.7e-06	27.5	RING-type zinc-finger
`XP_057809626.1`	Pfam	`PF00097`	zf-C3HC4	Domain	157	197	2.8e-06	27.8	Zinc finger, C3HC4 type (RING finger)
`XP_057809626.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	157	197	1.3e-07	32.0	Zinc finger, C3HC4 type (RING finger)
`XP_057809626.1`	Pfam	`PF13639`	zf-RING_2	Domain	157	198	1.2e-12	48.6	Ring finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057953641.1
TCCATGCACAAACTAAACACACATATAAAAACCCCACACAAATCTCATTCCCACAAATAATTAAACCAATCATGTCGACGGCCCGCCGCCCCGCCGTCGTAGTGAACGGCGTTCAAAGAGCAAGAACCCACCACTACTATTGGTGCCGCCGCTGCCAACGCTCCATCCGGACCACCACCACCAACCCCGCCGAGATACTATGCCCGCGCTGCTTCGGCCACATCCATCACGAGCTCGACGTCTCCAGGGCCGGGCCCCTC...

XM_057953640.1
ATAAAAACCCCACACAAATCTCATTCCCACAAATAATTAAACCAATCATGTCGACGGCCCGCCGCCCCGCCGTCGTAGTGAACGGCGTTCAAAGAGCAAGAACCCACCACTACTATTGGTGCCGCCGCTGCCAACGCTCCATCCGGACCACCACCACCAACCCCGCCGAGATACTATGCCCGCGCTGCTTCGGCCACATCCATCACGAGCTCGACGTCTCCAGGGCCGGGCCCCTCCTCGAGTCCGGCCCGGAGCCCTCT...

CDS

5 records

下载 CDS FASTA

LOC131023973
ATGTCGACGGCCCGCCGCCCCGCCGTCGTAGTGAACGGCGTTCAAAGAGCAAGAACCCACCACTACTATTGGTGCCGCCGCTGCCAACGCTCCATCCGGACCACCACCACCAACCCCGCCGAGATACTATGCCCGCGCTGCTTCGGCCACATCCATCACGAGCTCGACGTCTCCAGGGCCGGGCCCCTCCTCGAGTCCGGCCCGGAGCCCTCTCCAGGCGCGCGAGTGCTCGACGCCCTCGCCCGAATCTTGGACCCGCC...

Protein

5 records

下载 Protein FASTA

XP_057809621.1
MSTARRPAVVVNGVQRARTHHYYWCRRCQRSIRTTTTNPAEILCPRCFGHIHHELDVSRAGPLLESGPEPSPGARVLDALARILDPPHRQDDQWRAQPLSRNVSEDDDGSSRRARVLLQFIGPERASGPVLARPEQAEAELPVVEVSEELLKSEWCCPVCKEDFEVGVRVRELPCKHFYHDDCIMPWLHMHNTCPVCRHEVQQRSDSHNDTNFFFPGEDYDLQDFGYRGEEEEEEEDSRNWRWTQVFLSRPFTFLLNWAN...

XP_057809623.1
MSTARRPAVVVNGVQRARTHHYYWCRRCQRSIRTTTTNPAEILCPRCFGHIHHELDVSRAGPLLESGPEPSPGARVLDALARILDPPHRQDDQWRAQPLSRNVSEDDDGSSRRARVLLQFIGPERASGPVLARPEQAEAELPVVEVSEELLKSEWCCPVCKEDFEVGVRVRELPCKHFYHDDCIMPWLHMHNTCPVCRHEVQQRSDSHNDTNFFFPGEDYDLQDFGYRGEEEEEEEDSRNWRWTQVFLSRPFTFLLNWAN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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