Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001303`

染色体: Chr04 坐标: 20730897-20748029 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001303`
名称	SmilChr04G001303
描述	sterol 3-beta-glucosyltransferase UGT80B1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	20730897 - 20748029 / `+`

ID 对照

NCBI Gene ID	`LOC131019359`
GeneID	`131019359`
locus_tag	`-`
NCBI Name	`LOC131019359`
原始查询	`SmilChr04G001303`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sterol 3-beta-glucosyltransferase UGT80B1-like
产物	sterol 3-beta-glucosyltransferase UGT80B1-like
Arabidopsis	`AT5G24750` (AT5G24750) UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832544] identity=53.5; qcov=1.07; evalue=0; confidence=high
Rice	`Os02g0210800` - identity=62.8; qcov=0.326; evalue=8.34e-70; confidence=low
GO	GO:0008194 (UDP-glycosyltransferase activity)
KEGG	-
Pfam	PF06722 (EryCIII-like_C)
InterPro	-
eggNOG	-
NR	GeneID:131019359

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057803870.1`
2	Cytosol	细胞质基质	0.40000	`XP_057803870.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057803871.1`
4	Nucleus	细胞核	0.00000	`XP_057803870.1`
5	Chromosome	染色体	0.00000	`XP_057803870.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:20731146`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr4:20734449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,C3
`Chr4:20741954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr4:20742144`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B17,B94,C37,C54
`Chr4:20746625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr4:20746689`	`AT`	`A`	1bp_deletion	frameshift_variant	1	C19
`Chr4:20746689`	`AT`	`A`	1bp_deletion	CDS_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803870.1

511 aa

256

511

EryCIII-like_C

PF06722 EryCIII-like_C 387-440 aa

XP_057803871.1

510 aa

255

510

EryCIII-like_C

PF06722 EryCIII-like_C 386-439 aa

XP_057803872.1

480 aa

240

480

EryCIII-like_C

PF06722 EryCIII-like_C 356-409 aa

XP_057803873.1

479 aa

240

479

EryCIII-like_C

PF06722 EryCIII-like_C 355-408 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803870.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	387	440	6.8e-14	52.8	Erythromycin biosynthesis protein CIII-like, C-terminal domain
`XP_057803871.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	386	439	6.8e-14	52.8	Erythromycin biosynthesis protein CIII-like, C-terminal domain
`XP_057803872.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	356	409	6.2e-14	52.9	Erythromycin biosynthesis protein CIII-like, C-terminal domain
`XP_057803873.1`	Pfam	`PF06722`	EryCIII-like_C	Domain	355	408	6.2e-14	52.9	Erythromycin biosynthesis protein CIII-like, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057947888.1
GGAAATAAATGAAATGTTTTTAAGTGGCAGCACAATAATAATGAGTAGGATTCACCCACAAACAGAAAAGGTCGGTGCAAAAGTATGATGAGGACGAACCCAATCGTCGTGTTTATGGCATTTGGTACAAAAGGCGACGTTTATCCCATTGCTGCTATTGCTGCAGCTTTCGCTTCCGATCAAAAGCAGTATCAGGTCGCATTCGTAACTCATTCCGCGCACCAGAACCTGAAAGTTCACTTGGGAGCAAAGCGAATTTC...

XM_057947889.1
AATGAAATGTTTTTAAGTGGCAGCACAATAATAATGAGTAGGATTCACCCACAAACAGAAAAGGTCGGTGCAAAAGTATGATGAGGACGAACCCAATCGTCGTGTTTATGGCATTTGGTACAAAAGGCGACGTTTATCCCATTGCTGCTATTGCTGCAGCTTTCGCTTCCGATCAAAAGCAGTATCAGGTCGCATTCGTAACTCATTCCGCGCACCAGAACCTGAAAGTTCACTTGGGAGCAAAGCGAATTTCATACTTC...

CDS

4 records

下载 CDS FASTA

LOC131019359
ATGATGAGGACGAACCCAATCGTCGTGTTTATGGCATTTGGTACAAAAGGCGACGTTTATCCCATTGCTGCTATTGCTGCAGCTTTCGCTTCCGATCAAAAGCAGTATCAGGTCGCATTCGTAACTCATTCCGCGCACCAGAACCTGAAAGTTCACTTGGGAGCAAAGCGAATTTCATACTTCCCAATTTCTTCACCACCTGTTTTGTCTTTCCATCAAGACCATGATCCTGGAGGTCCTGTCGATACGTCTTTTCTTCT...

Protein

4 records

下载 Protein FASTA

XP_057803870.1
MMRTNPIVVFMAFGTKGDVYPIAAIAAAFASDQKQYQVAFVTHSAHQNLKVHLGAKRISYFPISSPPVLSFHQDHDPGGPVDTSFLLQKKEITRKHKQECVSVVERIYGEDPVMDGDLIVINFFALEGWSLAELFCVRCVVAAPYVVPYSAPTSFERQFTTELPLLYKYLREAPTGKIGWEDVMHWMWPLFTEDWGKWRSLDLKLSFLPFTVDPVTDLPTWHDRPSSPLLLYGFSQEVVECPGYWPSAVRVCGFWTLPAE...

XP_057803871.1
MMRTNPIVVFMAFGTKGDVYPIAAIAAAFASDQKQYQVAFVTHSAHQNLKVHLGAKRISYFPISSPPVLSFHQDHDPGGPVDTSFLLQKKEITRKHKQECVSVVERIYGEDPVMDGDLIVINFFALEGWSLAELFCVRCVVAAPYVVPYSAPTSFERQFTTELPLLYKYLREAPTGKIGWEDVMHWMWPLFTEDWGKWRSLDLKLSFLPFTDPVTDLPTWHDRPSSPLLLYGFSQEVVECPGYWPSAVRVCGFWTLPAEW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器