Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001330`

染色体: Chr04 坐标: 21480745-21484878 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001330`
名称	SmilChr04G001330
描述	WD-40 repeat-containing protein MSI1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	21480745 - 21484878 / `-`

ID 对照

NCBI Gene ID	`LOC131019382`
GeneID	`131019382`
locus_tag	`-`
NCBI Name	`LOC131019382`
原始查询	`SmilChr04G001330`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WD-40 repeat-containing protein MSI1
产物	WD-40 repeat-containing protein MSI1
Arabidopsis	`AT5G58230` (MSI1) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835935] identity=91.8; qcov=1; evalue=0; confidence=high
Rice	`Os03g0640100` (OsWD40-79) - identity=87; qcov=0.962; evalue=0; confidence=high
GO	GO:0005634 (nucleus); GO:0010468 (regulation of gene expression); GO:0042393 (histone binding)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage)); smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF12265 (CAF1C_H4-bd)
InterPro	-
eggNOG	-
NR	GeneID:131019382

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803907.1`
2	Nucleoplasm	核质	1.00000	`XP_057803907.1`
3	Chromosome	染色体	0.20000	`XP_057803907.1`
4	Nuclear body	核内小体	0.20000	`XP_057803907.1`
5	Cytoplasm	细胞质	0.20000	`XP_057803907.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:21480964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:21483644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B65,B67,C21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803907.1

424 aa

212

424

CAF1C_H4-bd

WD40

PF12265 CAF1C_H4-bd 19-88 aa PF00400 WD40 173-207 aa PF00400 WD40 221-256 aa PF00400 WD40 264-302 aa PF00400 WD40 309-346 aa PF00400 WD40 367-402 aa

XP_057803909.1

424 aa

212

424

CAF1C_H4-bd

WD40

PF12265 CAF1C_H4-bd 19-88 aa PF00400 WD40 173-207 aa PF00400 WD40 221-256 aa PF00400 WD40 264-302 aa PF00400 WD40 309-346 aa PF00400 WD40 367-402 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803907.1`	Pfam	`PF12265`	CAF1C_H4-bd	Repeat	19	88	1.5e-31	109.1	Histone-binding protein RBBP4 or subunit C of CAF1 complex
`XP_057803907.1`	Pfam	`PF00400`	WD40	Repeat	173	207	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803907.1`	Pfam	`PF00400`	WD40	Repeat	221	256	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803907.1`	Pfam	`PF00400`	WD40	Repeat	264	302	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803907.1`	Pfam	`PF00400`	WD40	Repeat	309	346	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803907.1`	Pfam	`PF00400`	WD40	Repeat	367	402	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803909.1`	Pfam	`PF12265`	CAF1C_H4-bd	Repeat	19	88	1.5e-31	109.1	Histone-binding protein RBBP4 or subunit C of CAF1 complex
`XP_057803909.1`	Pfam	`PF00400`	WD40	Repeat	173	207	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803909.1`	Pfam	`PF00400`	WD40	Repeat	221	256	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803909.1`	Pfam	`PF00400`	WD40	Repeat	264	302	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803909.1`	Pfam	`PF00400`	WD40	Repeat	309	346	6.4e-32	109.3	WD domain, G-beta repeat
`XP_057803909.1`	Pfam	`PF00400`	WD40	Repeat	367	402	6.4e-32	109.3	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057947924.1
AACCCTTTACAAAACCAGAAACATAAAAGATCCCTCTCTCGTCTCTTCCCTTCCCTCCAATTCTCCTTCCAAACCCTCCCAAAACCAAAATCATCACAATGGGGAAAGACGAGGACGAAATGCGGGGCGAAATCGAGGAGCGCCTCATCAACGAGGAGTACAAGATTTGGAAGAAGAACACCCCCTTTCTCTACGATCTGGTAATCACCCACGCCCTCGAGTGGCCCTCCCTCACCGTCGAGTGGCTGCCCGACCGCCTC...

XM_057947926.1
ACAAAACCAGAAACATAAAAGATCCCTCTCTCGTCTCTTCCCTTCCCTCCAATTCTCCTTCCAAACCCTCCCAAAACCAAAATCATCACAATGGGGAAAGACGAGGACGAAATGCGGGGCGAAATCGAGGAGCGCCTCATCAACGAGGAGTACAAGATTTGGAAGAAGAACACCCCCTTTCTCTACGATCTGGTAATCACCCACGCCCTCGAGTGGCCCTCCCTCACCGTCGAGTGGCTGCCCGACCGCCTCGAGCCTCC...

CDS

2 records

下载 CDS FASTA

LOC131019382
ATGGGGAAAGACGAGGACGAAATGCGGGGCGAAATCGAGGAGCGCCTCATCAACGAGGAGTACAAGATTTGGAAGAAGAACACCCCCTTTCTCTACGATCTGGTAATCACCCACGCCCTCGAGTGGCCCTCCCTCACCGTCGAGTGGCTGCCCGACCGCCTCGAGCCTCCCGGTAAGGATTACTCCGTCCAGAAGATGATCCTCGGCACCCACACCTCCGAGAATGAGCCCAATTACTTGATGCTCGCGCAGGCTCAGCT...

Protein

2 records

下载 Protein FASTA

XP_057803907.1
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRLEPPGKDYSVQKMILGTHTSENEPNYLMLAQAQLPLEDAENDARQYDDERSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDAQICLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHEYLFGSVGDDQYLHVWDLRNP...

XP_057803909.1
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRLEPPGKDYSVQKMILGTHTSENEPNYLMLAQAQLPLEDAENDARQYDDERSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDAQICLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHEYLFGSVGDDQYLHVWDLRNP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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