当前解析结果
SmilChr04G001340| 统一新 Gene ID | SmilChr04G001340 |
|---|---|
| 名称 | SmilChr04G001340 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 21662247 - 21662963 / - |
| NCBI Gene ID | LOC131023142 |
|---|---|
| GeneID | 131023142 |
| locus_tag | - |
| NCBI Name | LOC131023142 |
| 原始查询 | SmilChr04G001340 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=39.1; qcov=0.773; evalue=2.2e-37; confidence=medium |
| Rice | Os11g0656500- identity=48; qcov=0.954; evalue=1.85e-64; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023142 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808672.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057808672.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057808672.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057808672.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057808672.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:21662342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr4:21662397 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C71 |
Chr4:21662397 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C71 |
Chr4:21662616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B126,B42,B60,C21,C47 |
Chr4:21662665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B76 |
Chr4:21662684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,D8 |
Chr4:21662705 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:21662711 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | B28,B40,C39,C78 |
Chr4:21662711 |
TG |
T |
1bp_deletion | CDS_variant | 4 | B28,B40,C39,C78 |
Chr4:21662778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B95,C61,D6 |
Chr4:21662788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B78 |
Chr4:21662811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,B79 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。