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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001347

染色体: Chr04 坐标: 21829499-21833157 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001347
名称SmilChr04G001347
描述pentatricopeptide repeat-containing protein At2g06000-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向21829499 - 21833157 / -

ID 对照

NCBI Gene IDLOC131019392
GeneID131019392
locus_tag-
NCBI NameLOC131019392
原始查询SmilChr04G001347

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At2g06000-like
产物pentatricopeptide repeat-containing protein At2g06000-like
ArabidopsisAT2G06000 (AT2G06000)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815153]
identity=47.9; qcov=0.949; evalue=4.58e-165; confidence=high
RiceOs04g0446100
-
identity=44.5; qcov=0.743; evalue=2.07e-126; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131019392

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057803916.1
2 Chloroplast 叶绿体 0.20000 XP_057803916.1
3 Nucleus 细胞核 0.00000 XP_057803916.1
4 Chromosome 染色体 0.00000 XP_057803916.1
5 Centromere 着丝粒 0.00000 XP_057803916.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:21831344 G GTC 2bp_insertion stop_gained,frameshift_variant 168 A1,A10,A11,A13,A14,A15,A19,A2,A20,A21,A23,A24,A25,A5,A6,A7,A8,A9,B100,B101,B102,B103,B105,B106,B107,B111,B112,B119,B12,B120,B121,B122,B123,B127,B128,B13,B130,B133,B134,B135,B137,B138,B139,B14,B15,B16,B17,B18,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B34,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B55,B56,B57,B6,B60,B62,B64,B65,B67,B68,B69,B71,B76,B77,B8,B80,B81,B82,B85,B86,B87,B88,B9,B94,B96,B98,B99,C1,C14,C15,C16,C18,C20,C21,C22,C23,C24,C25,C32,C33,C34,C35,C37,C38,C4,C40,C41,C43,C44,C46,C47,C48,C49,C5,C50,C51,C54,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C66,C68,C7,C70,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C83,C84,C86,C9,D1,D2,D3,D4,D5,D6,D8
Chr4:21831345 AGG A 2bp_deletion frameshift_variant 168 A1,A10,A11,A13,A14,A15,A19,A2,A20,A21,A23,A24,A25,A5,A6,A7,A8,A9,B100,B101,B102,B103,B105,B106,B107,B111,B112,B119,B12,B120,B121,B122,B123,B127,B128,B13,B130,B133,B134,B135,B137,B138,B139,B14,B15,B16,B17,B18,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B34,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B55,B56,B57,B6,B60,B62,B64,B65,B67,B68,B69,B71,B76,B77,B8,B80,B81,B82,B85,B86,B87,B88,B9,B94,B96,B98,B99,C1,C14,C15,C16,C18,C20,C21,C22,C23,C24,C25,C32,C33,C34,C35,C37,C38,C4,C40,C41,C43,C44,C46,C47,C48,C49,C5,C50,C51,C54,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C66,C68,C7,C70,C72,C73,C74,C75,C76,C77,C78,C79,C8,C80,C83,C84,C86,C9,D1,D2,D3,D4,D5,D6,D8
Chr4:21831819 C T EMS_canonical_SNV CDS_variant 1 D10
Chr4:21832135 C T EMS_canonical_SNV CDS_variant 2 C15,D10
Chr4:21832452 C T EMS_canonical_SNV CDS_variant 1 B35
Chr4:21832906 C T EMS_canonical_SNV CDS_variant 1 A6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803916.1
548 aa
N
1
274
548
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF01535 PPR 105-135 aa PF12854 PPR_1 211-242 aa PF13812 PPR_3 211-259 aa PF13041 PPR_2 213-261 aa PF01535 PPR 217-246 aa PF13812 PPR_3 238-289 aa PF12854 PPR_1 245-275 aa PF13041 PPR_2 248-294 aa PF01535 PPR 251-277 aa PF13812 PPR_3 279-332 aa PF12854 PPR_1 281-312 aa PF13041 PPR_2 284-332 aa PF01535 PPR 287-317 aa PF12854 PPR_1 315-348 aa PF13041 PPR_2 320-368 aa PF01535 PPR 322-352 aa PF23276 TPR_24 335-446 aa PF13812 PPR_3 345-401 aa PF12854 PPR_1 351-383 aa PF13041 PPR_2 354-403 aa PF01535 PPR 357-385 aa PF17177 PPR_long 372-470 aa PF12854 PPR_1 387-416 aa PF01535 PPR 392-419 aa PF13812 PPR_3 419-469 aa PF12854 PPR_1 423-454 aa PF13041 PPR_2 428-473 aa PF01535 PPR 429-458 aa PF12854 PPR_1 456-489 aa PF13041 PPR_2 462-507 aa PF01535 PPR 464-493 aa
XP_057803917.1
548 aa
N
1
274
548
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF01535 PPR 105-135 aa PF12854 PPR_1 211-242 aa PF13812 PPR_3 211-259 aa PF13041 PPR_2 213-261 aa PF01535 PPR 217-246 aa PF13812 PPR_3 238-289 aa PF12854 PPR_1 245-275 aa PF13041 PPR_2 248-294 aa PF01535 PPR 251-277 aa PF13812 PPR_3 279-332 aa PF12854 PPR_1 281-312 aa PF13041 PPR_2 284-332 aa PF01535 PPR 287-317 aa PF12854 PPR_1 315-348 aa PF13041 PPR_2 320-368 aa PF01535 PPR 322-352 aa PF23276 TPR_24 335-446 aa PF13812 PPR_3 345-401 aa PF12854 PPR_1 351-383 aa PF13041 PPR_2 354-403 aa PF01535 PPR 357-385 aa PF17177 PPR_long 372-470 aa PF12854 PPR_1 387-416 aa PF01535 PPR 392-419 aa PF13812 PPR_3 419-469 aa PF12854 PPR_1 423-454 aa PF13041 PPR_2 428-473 aa PF01535 PPR 429-458 aa PF12854 PPR_1 456-489 aa PF13041 PPR_2 462-507 aa PF01535 PPR 464-493 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057803916.1 Pfam PF01535 PPR Repeat 105 135 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 211 242 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF13812 PPR_3 Repeat 211 259 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803916.1 Pfam PF13041 PPR_2 Repeat 213 261 1.5e-104 342.7 PPR repeat family
XP_057803916.1 Pfam PF01535 PPR Repeat 217 246 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF13812 PPR_3 Repeat 238 289 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 245 275 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF13041 PPR_2 Repeat 248 294 1.5e-104 342.7 PPR repeat family
XP_057803916.1 Pfam PF01535 PPR Repeat 251 277 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF13812 PPR_3 Repeat 279 332 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 281 312 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF13041 PPR_2 Repeat 284 332 1.5e-104 342.7 PPR repeat family
XP_057803916.1 Pfam PF01535 PPR Repeat 287 317 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 315 348 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF13041 PPR_2 Repeat 320 368 1.5e-104 342.7 PPR repeat family
XP_057803916.1 Pfam PF01535 PPR Repeat 322 352 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF23276 TPR_24 Repeat 335 446 5.4e-24 85.3 Pentatricopeptide repeat-containing protein
XP_057803916.1 Pfam PF13812 PPR_3 Repeat 345 401 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 351 383 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF13041 PPR_2 Repeat 354 403 1.5e-104 342.7 PPR repeat family
XP_057803916.1 Pfam PF01535 PPR Repeat 357 385 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF17177 PPR_long Repeat 372 470 1.7e-21 77.3 Pentacotripeptide-repeat region of PRORP
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 387 416 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF01535 PPR Repeat 392 419 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF13812 PPR_3 Repeat 419 469 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 423 454 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF13041 PPR_2 Repeat 428 473 1.5e-104 342.7 PPR repeat family
XP_057803916.1 Pfam PF01535 PPR Repeat 429 458 5.9e-75 243.1 PPR repeat
XP_057803916.1 Pfam PF12854 PPR_1 Repeat 456 489 8.5e-102 333.3 PPR repeat
XP_057803916.1 Pfam PF13041 PPR_2 Repeat 462 507 1.5e-104 342.7 PPR repeat family
XP_057803916.1 Pfam PF01535 PPR Repeat 464 493 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF01535 PPR Repeat 105 135 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 211 242 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF13812 PPR_3 Repeat 211 259 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803917.1 Pfam PF13041 PPR_2 Repeat 213 261 1.5e-104 342.7 PPR repeat family
XP_057803917.1 Pfam PF01535 PPR Repeat 217 246 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF13812 PPR_3 Repeat 238 289 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 245 275 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF13041 PPR_2 Repeat 248 294 1.5e-104 342.7 PPR repeat family
XP_057803917.1 Pfam PF01535 PPR Repeat 251 277 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF13812 PPR_3 Repeat 279 332 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 281 312 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF13041 PPR_2 Repeat 284 332 1.5e-104 342.7 PPR repeat family
XP_057803917.1 Pfam PF01535 PPR Repeat 287 317 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 315 348 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF13041 PPR_2 Repeat 320 368 1.5e-104 342.7 PPR repeat family
XP_057803917.1 Pfam PF01535 PPR Repeat 322 352 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF23276 TPR_24 Repeat 335 446 5.4e-24 85.3 Pentatricopeptide repeat-containing protein
XP_057803917.1 Pfam PF13812 PPR_3 Repeat 345 401 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 351 383 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF13041 PPR_2 Repeat 354 403 1.5e-104 342.7 PPR repeat family
XP_057803917.1 Pfam PF01535 PPR Repeat 357 385 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF17177 PPR_long Repeat 372 470 1.7e-21 77.3 Pentacotripeptide-repeat region of PRORP
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 387 416 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF01535 PPR Repeat 392 419 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF13812 PPR_3 Repeat 419 469 7.7e-41 138.7 Pentatricopeptide repeat domain
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 423 454 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF13041 PPR_2 Repeat 428 473 1.5e-104 342.7 PPR repeat family
XP_057803917.1 Pfam PF01535 PPR Repeat 429 458 5.9e-75 243.1 PPR repeat
XP_057803917.1 Pfam PF12854 PPR_1 Repeat 456 489 8.5e-102 333.3 PPR repeat
XP_057803917.1 Pfam PF13041 PPR_2 Repeat 462 507 1.5e-104 342.7 PPR repeat family
XP_057803917.1 Pfam PF01535 PPR Repeat 464 493 5.9e-75 243.1 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057947933.1
TTGCATTGCGGAAAGTTTGTAAAGAATTGCGACTCTCTGAGTAGTAAACTTTTGTTCACGAATTCTTGTGGAACGACCTTCCAATCGCACTACACACCAAATTCGAATTCCACACTCAATCTGATTCAATGATATTTCATTCCAACATACAAGAATTAGGTTTTTGCCGCAAAATGCAGATTTCCATGACTAATCTTTGAATTTTGTCCGATAATAATGCAATTGAGGGCTCCAAAGGTACGTTTCTCTAAGATTTTTGC...
XM_057947934.1
TTGCATTGCGGAAAGTTTGTAAAGAATTGCGACTCTCTGAGTAGTAAACTTTTGTTCACGAATTCTTGTGGAACGACCTTCCAATCGCACTACACACCAAATTCGAATTCCACACTCAATCTGATTCAATGATATTTCATTCCAACATACAAGAATTAGGTTTTTGCCGCAAAATGCAGATTTCCATGACTAATCTTTGAATTTTGTCCGATAATAATGCAATTGAGGGCTCCAAAGGTACGTTTCTCTAAGATTTTTGC...

CDS

2 records

下载 CDS FASTA
LOC131019392
ATGCAATTGAGGGCTCCAAAGGTACGTTTCTCTAAGATTTTTGCCACAGCTTCGTTCCATGGTCACGCCCGCATAGAATCATCACGCTCTGCTTCTGCATCCACTTGCTGGTTCATTAAAGTGGTATCCACCTCCTGCATTCACCTCTCGAGGTCGCTTGATTTTCTCGAAACTGATTATTTCCGGGACAATTTGAATTCCCTTGTAGCTTACGGCGTGGTCCATCGCATCCACAGTAGATTAAATAACCCTAGTTTAGC...
LOC131019392
ATGCAATTGAGGGCTCCAAAGGTACGTTTCTCTAAGATTTTTGCCACAGCTTCGTTCCATGGTCACGCCCGCATAGAATCATCACGCTCTGCTTCTGCATCCACTTGCTGGTTCATTAAAGTGGTATCCACCTCCTGCATTCACCTCTCGAGGTCGCTTGATTTTCTCGAAACTGATTATTTCCGGGACAATTTGAATTCCCTTGTAGCTTACGGCGTGGTCCATCGCATCCACAGTAGATTAAATAACCCTAGTTTAGC...

Protein

2 records

下载 Protein FASTA
XP_057803916.1
MQLRAPKVRFSKIFATASFHGHARIESSRSASASTCWFIKVVSTSCIHLSRSLDFLETDYFRDNLNSLVAYGVVHRIHSRLNNPSLAFEFFRYSRLNLKLIHLESTYDLLLRSLCEKGVHDSAAAVYECMKIDGFWPNSSVLDVLVSALANAGKFRTAEEILIAEAEFCNEKEKRVSSFVYNNYLSILVNRNRINEAVVFFREHILRLRSFDPDTCSFNIVVRGLCRTSKVEKAFEFFDAMRDFDCYPDIVTYNTLINGF...
XP_057803917.1
MQLRAPKVRFSKIFATASFHGHARIESSRSASASTCWFIKVVSTSCIHLSRSLDFLETDYFRDNLNSLVAYGVVHRIHSRLNNPSLAFEFFRYSRLNLKLIHLESTYDLLLRSLCEKGVHDSAAAVYECMKIDGFWPNSSVLDVLVSALANAGKFRTAEEILIAEAEFCNEKEKRVSSFVYNNYLSILVNRNRINEAVVFFREHILRLRSFDPDTCSFNIVVRGLCRTSKVEKAFEFFDAMRDFDCYPDIVTYNTLINGF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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