当前解析结果
SmilChr04G001370| 统一新 Gene ID | SmilChr04G001370 |
|---|---|
| 名称 | SmilChr04G001370 |
| 描述 | putative clathrin assembly protein At1g03050 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 22249523 - 22251891 / + |
| NCBI Gene ID | LOC131019417 |
|---|---|
| GeneID | 131019417 |
| locus_tag | - |
| NCBI Name | LOC131019417 |
| 原始查询 | SmilChr04G001370 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative clathrin assembly protein At1g03050 |
| 产物 | putative clathrin assembly protein At1g03050 |
| Arabidopsis | AT1G03050 (AT1G03050)ENTH/ANTH/VHS superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839416] identity=59.6; qcov=1.04; evalue=0; confidence=high |
| Rice | Os05g0426100- identity=49.4; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0000149 (SNARE binding); GO:0005545 (1-phosphatidylinositol binding); GO:0005546 (phosphatidylinositol-4,5-bisphosphate binding); GO:0005905 (clathrin-coated pit); GO:0006900 (vesicle budding from membrane); GO:0030136 (clathrin-coated vesicle); GO:0032050 (clathrin heavy chain binding); GO:0048268 (clathrin coat assembly); GO:0072583 (clathrin-dependent endocytosis) |
| KEGG | - |
| Pfam | PF01417 (ENTH); PF07651 (ANTH) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019417 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057803945.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057803945.1 |
| 3 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.20000 | XP_057803945.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803945.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803945.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:22250043 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr4:22250199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B108,B132,D7 |
Chr4:22250277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B74,C56 |
Chr4:22250292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B76,B95,C39 |
Chr4:22250316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,C57 |
Chr4:22250592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,B88 |
Chr4:22250602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C69,D4 |
Chr4:22250606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B58,B59,B63,C85 |
Chr4:22250615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B107,C37,C53,C87 |
Chr4:22250623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,C18,C50 |
Chr4:22250773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B108,B132,D7 |
Chr4:22250802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B57,B88,C27,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803945.1PF01417
ENTH 31-108 aa
PF07651
ANTH 32-311 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803945.1 |
Pfam | PF01417 |
ENTH | Repeat | 31 | 108 | 3.2e-07 | 31.1 | ENTH domain |
XP_057803945.1 |
Pfam | PF07651 |
ANTH | Repeat | 32 | 311 | 2.4e-81 | 273.5 | ANTH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。