当前解析结果
SmilChr04G001388| 统一新 Gene ID | SmilChr04G001388 |
|---|---|
| 名称 | SmilChr04G001388 |
| 描述 | uncharacterized SmilChr04G001388 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 22551800 - 22555552 / - |
| NCBI Gene ID | LOC131019429 |
|---|---|
| GeneID | 131019429 |
| locus_tag | - |
| NCBI Name | LOC131019429 |
| 原始查询 | SmilChr04G001388 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | loricrin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836576]; symbol=AT5G64550; hit=AT5G64550; species=arabidopsis; confidence=high |
| 产物 | loricrin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836576]; symbol=AT5G64550; hit=AT5G64550; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G64550 (AT5G64550)loricrin-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836576] identity=57.7; qcov=1.06; evalue=0; confidence=high |
| Rice | Os04g0640900 (IIP5)- identity=57.6; qcov=0.962; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF24906 (Zf_WRKY19) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019429 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803952.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803952.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803952.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803952.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803952.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:22552257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B64 |
Chr4:22552269 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr4:22552509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,C11,C3,C69 |
Chr4:22552730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:22552825 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:22553126 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B25,C18,C50 |
Chr4:22553171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B113,B41,B50,C10 |
Chr4:22553439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A1,B25,C18,C50 |
Chr4:22553476 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr4:22553723 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B131 |
Chr4:22553723 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803952.1PF24906
Zf_WRKY19 219-242 aa
PF24906
Zf_WRKY19 243-267 aa
PF24906
Zf_WRKY19 268-292 aa
PF24906
Zf_WRKY19 319-343 aa
PF24906
Zf_WRKY19 344-368 aa
PF24906
Zf_WRKY19 422-446 aa
PF24906
Zf_WRKY19 447-471 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803952.1 |
Pfam | PF24906 |
Zf_WRKY19 | Domain | 219 | 242 | 4.8e-71 | 234.8 | WRKY19 zinc finger domain |
XP_057803952.1 |
Pfam | PF24906 |
Zf_WRKY19 | Domain | 243 | 267 | 4.8e-71 | 234.8 | WRKY19 zinc finger domain |
XP_057803952.1 |
Pfam | PF24906 |
Zf_WRKY19 | Domain | 268 | 292 | 4.8e-71 | 234.8 | WRKY19 zinc finger domain |
XP_057803952.1 |
Pfam | PF24906 |
Zf_WRKY19 | Domain | 319 | 343 | 4.8e-71 | 234.8 | WRKY19 zinc finger domain |
XP_057803952.1 |
Pfam | PF24906 |
Zf_WRKY19 | Domain | 344 | 368 | 4.8e-71 | 234.8 | WRKY19 zinc finger domain |
XP_057803952.1 |
Pfam | PF24906 |
Zf_WRKY19 | Domain | 422 | 446 | 4.8e-71 | 234.8 | WRKY19 zinc finger domain |
XP_057803952.1 |
Pfam | PF24906 |
Zf_WRKY19 | Domain | 447 | 471 | 4.8e-71 | 234.8 | WRKY19 zinc finger domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。