Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001396`

染色体: Chr04 坐标: 22749823-22755087 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001396`
名称	SmilChr04G001396
描述	uncharacterized SmilChr04G001396
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	22749823 - 22755087 / `+`

ID 对照

NCBI Gene ID	`LOC131019435`
GeneID	`131019435`
locus_tag	`-`
NCBI Name	`LOC131019435`
原始查询	`SmilChr04G001396`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839935]; symbol=AT1G30550; hit=AT1G30550; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839935]; symbol=AT1G30550; hit=AT1G30550; species=arabidopsis; confidence=high
Arabidopsis	`AT1G30550` (AT1G30550) S-adenosyl-L-methionine-dependent methyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839935] identity=63.4; qcov=0.752; evalue=1.78e-71; confidence=high
Rice	`Os06g0187100` - identity=63.9; qcov=0.673; evalue=1.32e-58; confidence=high
GO	GO:0005634 (nucleus); GO:0009452 (7-methylguanosine RNA capping); GO:0036261 (7-methylguanosine cap hypermethylation); GO:0071164 (RNA cap trimethylguanosine synthase activity)
KEGG	-
Pfam	PF01170 (UPF0020); PF02475 (TRM5-TYW2_MTfase); PF09445 (Methyltransf_15)
InterPro	-
eggNOG	-
NR	GeneID:131019435

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057803959.1`
2	Nucleolus	核仁	1.00000	`XP_057803959.1`
3	Cytoplasm	细胞质	0.80000	`XP_057803961.1`
4	Cytosol	细胞质基质	0.80000	`XP_057803961.1`
5	Nucleolus rim	Nucleolus rim	0.20000	`XP_057803959.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:22750153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B27,C43,C70,C86
`Chr4:22750456`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B27,C43,C70,C86
`Chr4:22750490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,B24,C39,C75,C82
`Chr4:22754610`	`G`	`GT`	1bp_insertion	frameshift_variant	7	B27,B59,C37,C43,C70,C86,D11
`Chr4:22754669`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,C48,D7
`Chr4:22754670`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:22754681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B35,C16,C62,D3
`Chr4:22754700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057803959.1

257 aa

128

257

TRM5-TYW2_MTfase

Methyltransf_15

UPF0020

PF02475 TRM5-TYW2_MTfase 75-167 aa PF09445 Methyltransf_15 95-251 aa PF01170 UPF0020 116-177 aa

XP_057803960.1

254 aa

127

254

TRM5-TYW2_MTfase

Methyltransf_15

UPF0020

PF02475 TRM5-TYW2_MTfase 75-164 aa PF09445 Methyltransf_15 95-248 aa PF01170 UPF0020 107-174 aa

XP_057803961.1

228 aa

114

228

TRM5-TYW2_MTfase

Methyltransf_15

PF02475 TRM5-TYW2_MTfase 75-158 aa PF09445 Methyltransf_15 95-163 aa PF09445 Methyltransf_15 165-222 aa

XP_057803963.1

225 aa

112

225

TRM5-TYW2_MTfase

Methyltransf_15

PF02475 TRM5-TYW2_MTfase 75-155 aa PF09445 Methyltransf_15 95-160 aa PF09445 Methyltransf_15 162-219 aa

XP_057803964.1

214 aa

107

214

TRM5-TYW2_MTfase

Methyltransf_15

UPF0020

PF02475 TRM5-TYW2_MTfase 75-167 aa PF09445 Methyltransf_15 95-188 aa PF01170 UPF0020 116-174 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057803959.1`	Pfam	`PF02475`	TRM5-TYW2_MTfase	Domain	75	167	1.2e-09	39.0	TRM5/TYW2 methyltransferase domain
`XP_057803959.1`	Pfam	`PF09445`	Methyltransf_15	Family	95	251	1.5e-40	139.2	RNA cap guanine-N2 methyltransferase
`XP_057803959.1`	Pfam	`PF01170`	UPF0020	Domain	116	177	2.3e-05	24.9	RMKL-like, methyltransferase domain
`XP_057803960.1`	Pfam	`PF02475`	TRM5-TYW2_MTfase	Domain	75	164	2.4e-09	38.1	TRM5/TYW2 methyltransferase domain
`XP_057803960.1`	Pfam	`PF09445`	Methyltransf_15	Family	95	248	2.7e-42	144.9	RNA cap guanine-N2 methyltransferase
`XP_057803960.1`	Pfam	`PF01170`	UPF0020	Domain	107	174	2.2e-05	25.0	RMKL-like, methyltransferase domain
`XP_057803961.1`	Pfam	`PF02475`	TRM5-TYW2_MTfase	Domain	75	158	5.2e-09	37.0	TRM5/TYW2 methyltransferase domain
`XP_057803961.1`	Pfam	`PF09445`	Methyltransf_15	Family	95	163	1.5e-25	90.4	RNA cap guanine-N2 methyltransferase
`XP_057803961.1`	Pfam	`PF09445`	Methyltransf_15	Family	165	222	1.5e-25	90.4	RNA cap guanine-N2 methyltransferase
`XP_057803963.1`	Pfam	`PF02475`	TRM5-TYW2_MTfase	Domain	75	155	1e-08	36.1	TRM5/TYW2 methyltransferase domain
`XP_057803963.1`	Pfam	`PF09445`	Methyltransf_15	Family	95	160	2.8e-27	96.0	RNA cap guanine-N2 methyltransferase
`XP_057803963.1`	Pfam	`PF09445`	Methyltransf_15	Family	162	219	2.8e-27	96.0	RNA cap guanine-N2 methyltransferase
`XP_057803964.1`	Pfam	`PF02475`	TRM5-TYW2_MTfase	Domain	75	167	8.1e-10	39.6	TRM5/TYW2 methyltransferase domain
`XP_057803964.1`	Pfam	`PF09445`	Methyltransf_15	Family	95	188	7.2e-29	101.2	RNA cap guanine-N2 methyltransferase
`XP_057803964.1`	Pfam	`PF01170`	UPF0020	Domain	116	174	1.6e-05	25.4	RMKL-like, methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057947981.1
AATAAAAAAAAAATACCTTAAATATACAGAATGCCCAATTTTTTTTTCTCGAGGCCTGCATACACAAAACATTAGATCCCAAATCATTAATTCCTAACAAAATGATTCTTGTGAGTATATAAATATTGGTAAGACCAAAAAAAAAAAACTTTGGTTAAGTAACAAAAGTATGGAATTTGGGGGGGAAAACTGAGAAGAGGAGAAAGCGGAGAAGCTTCAACTCCGGCCACCGGAGTTAGAACAGAAAAATAAAATCCCGG...

XM_057947978.1
AATAAAAAAAAAATACCTTAAATATACAGAATGCCCAATTTTTTTTTCTCGAGGCCTGCATACACAAAACATTAGATCCCAAATCATTAATTCCTAACAAAATGATTCTTGTGAGTATATAAATATTGGTAAGACCAAAAAAAAAAAACTTTGGTTAAGTAACAAAAGTATGGAATTTGGGGGGGAAAACTGAGAAGAGGAGAAAGCGGAGAAGCTTCAACTCCGGCCACCGGAGTTAGAACAGAAAAATAAAATCCCGG...

CDS

5 records

下载 CDS FASTA

LOC131019435
ATGGCTACAGCCAAAGGTTCCTCCATCGTTTTGCCCCGTACAAGAAAACAGCGCAAACGTGTCAAACGAAAAGTGAAAATCAGGGAGAAGTGGAAAGCCATGAAGACGAAGAAGCTCAAAGAGAAAGCAAATGTTACTCCACTCGTGACCAAGTACTGGCTCCAAAGATATGATCTCTTCTCCAAATACGATGCGGGGATCAAAATGGATGAAGAGGGGTGGTTCTCCGTCACGCCGGAGGAAATCGCCGCCCGCCAGGC...

Protein

5 records

下载 Protein FASTA

XP_057803959.1
MATAKGSSIVLPRTRKQRKRVKRKVKIREKWKAMKTKKLKEKANVTPLVTKYWLQRYDLFSKYDAGIKMDEEGWFSVTPEEIAARQARRFAGAGVVIDAFAGVGGNAIQFAKVIVRCHHVVAIEIDPKKVALAFHNAKIYGVQDQIDFIVGDFFQLAPFLKGDVVFLSPPWGGPSYKAKENFTLDLLKPKDGHSLFQAAQAITPNIVMFLPRNVDVLQASELSWLSSPPLDIEMEENLVRGRLKGITVYFRDTMLCA

XP_057803960.1
MATAKGSSIVLPRTRKQRKRVKRKVKIREKWKAMKTKKLKEKANVTPLVTKYWLQRYDLFSKYDAGIKMDEEGWFSVTPEEIAARQARRFAGAGVVIDAFAGVGGNAIQFAKVCHHVVAIEIDPKKVALAFHNAKIYGVQDQIDFIVGDFFQLAPFLKGDVVFLSPPWGGPSYKAKENFTLDLLKPKDGHSLFQAAQAITPNIVMFLPRNVDVLQASELSWLSSPPLDIEMEENLVRGRLKGITVYFRDTMLCA

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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