当前解析结果
SmilChr04G001432| 统一新 Gene ID | SmilChr04G001432 |
|---|---|
| 名称 | SmilChr04G001432 |
| 描述 | uncharacterized SmilChr04G001432 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 23350826 - 23353465 / - |
| NCBI Gene ID | LOC131019467 |
|---|---|
| GeneID | 131019467 |
| locus_tag | - |
| NCBI Name | LOC131019467 |
| 原始查询 | SmilChr04G001432 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830802]; symbol=AT5G09430; hit=AT5G09430; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830802]; symbol=AT5G09430; hit=AT5G09430; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G09430 (AT5G09430)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830802] identity=64.5; qcov=0.852; evalue=5.72e-152; confidence=high |
| Rice | Os07g0622700 (P0524E08.104)- identity=48.4; qcov=0.857; evalue=5.68e-103; confidence=high |
| GO | GO:0003824 (catalytic activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019467 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057803999.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057803999.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057803999.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057803999.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057803999.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:23351104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr4:23351171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B58,B59,B63,C85 |
Chr4:23351271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr4:23352704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr4:23352946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr4:23352977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B27,C43,C70,C86 |
Chr4:23353018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,C18,C22,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057803999.1PF00561
Abhydrolase_1 50-285 aa
PF12697
Abhydrolase_6 52-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803999.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 50 | 285 | 1.7e-27 | 97.4 | alpha/beta hydrolase fold |
XP_057803999.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 52 | 290 | 3.8e-18 | 67.6 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。