当前解析结果
SmilChr04G001444| 统一新 Gene ID | SmilChr04G001444 |
|---|---|
| 名称 | SmilChr04G001444 |
| 描述 | uncharacterized SmilChr04G001444 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 23731533 - 23735024 / - |
| NCBI Gene ID | LOC131019480 |
|---|---|
| GeneID | 131019480 |
| locus_tag | - |
| NCBI Name | LOC131019480 |
| 原始查询 | SmilChr04G001444 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=weak |
| 产物 | hit=Os12g0597300; species=rice; confidence=weak |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=21.8; qcov=0.554; evalue=3.34e-12; confidence=weak |
| Rice | Os12g0597300- identity=23; qcov=0.475; evalue=1.08e-13; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF03108 (DBD_Tnp_Mut); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019480 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804005.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804005.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804005.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804005.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804005.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:23733346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr4:23733401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,B59 |
Chr4:23733420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B47,C42 |
Chr4:23733435 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B23,B34,C31,C63,D3 |
Chr4:23733435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B23,B34,C31,C63,D3 |
Chr4:23733439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,A8,B58 |
Chr4:23733445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B24,B26,B7,C33,C77 |
Chr4:23733475 |
CT |
C |
1bp_deletion | frameshift_variant | 98 | A11,A15,A16,A18,A2,A21,A22,A25,A4,A5,A7,A8,B1,B10,B101,B106,B108,B109,B111,B112,B117,B119,B120,B123,B124,B126,B131,B134,B136,B138,B139,B17,B18,B2,B22,B23,B26,B27,B3,B30,B36,B40,B46,B48,B5,B52,B58,B59,B62,B66,B67,B71,B72,B79,B8,B83,B84,B88,B9,B90,C10,C14,C19,C20,C23,C26,C27,C28,C30,C31,C33,C34,C35,C38,C39,C41,C42,C43,C45,C50,C52,C53,C54,C55,C58,C62,C66,C69,C74,C78,C79,C82,C84,C86,D10,D3,D4,D9 |
Chr4:23733488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B40,B90,C23 |
Chr4:23733608 |
G |
A |
EMS_canonical_SNV | stop_gained | 235 | A1,A10,A11,A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A9,B101,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B118,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B132,B133,B134,B135,B136,B138,B139,B140,B15,B16,B17,B18,B19,B2,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B75,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B87,B88,B89,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C12,C13,C14,C15,C16,C18,C19,C20,C21,C22,C23,C24,C25,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr4:23733626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B16,C40,C48 |
Chr4:23733637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,C27,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804005.1PF26130
PB1-like 2-65 aa
PF03108
DBD_Tnp_Mut 295-358 aa
XP_057804006.1PF26130
PB1-like 2-65 aa
PF03108
DBD_Tnp_Mut 295-358 aa
XP_057804007.1PF26130
PB1-like 2-65 aa
PF03108
DBD_Tnp_Mut 295-358 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804005.1 |
Pfam | PF26130 |
PB1-like | Domain | 2 | 65 | 4.6e-08 | 34.0 | PB1-like domain |
XP_057804005.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 295 | 358 | 2.9e-08 | 33.9 | MuDR family transposase |
XP_057804006.1 |
Pfam | PF26130 |
PB1-like | Domain | 2 | 65 | 4.6e-08 | 34.0 | PB1-like domain |
XP_057804006.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 295 | 358 | 2.9e-08 | 33.9 | MuDR family transposase |
XP_057804007.1 |
Pfam | PF26130 |
PB1-like | Domain | 2 | 65 | 4.6e-08 | 34.0 | PB1-like domain |
XP_057804007.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 295 | 358 | 2.9e-08 | 33.9 | MuDR family transposase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。