Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001484`

染色体: Chr04 坐标: 24271177-24288406 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001484`
名称	SmilChr04G001484
描述	valine--tRNA ligase, chloroplastic/mitochondrial 2
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	24271177 - 24288406 / `+`

ID 对照

NCBI Gene ID	`LOC131019513`
GeneID	`131019513`
locus_tag	`-`
NCBI Name	`LOC131019513`
原始查询	`SmilChr04G001484`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	valine--tRNA ligase, chloroplastic/mitochondrial 2
产物	valine--tRNA ligase%2C chloroplastic/mitochondrial 2
Arabidopsis	`AT5G16715` (EMB2247) protein EMBRYO DEFECTIVE 2247 [Source:NCBI gene (formerly Entrezgene);Acc:831533] identity=79.9; qcov=0.957; evalue=0; confidence=high
Rice	`Os07g0163500` (WP1) - identity=79.7; qcov=0.984; evalue=0; confidence=high
GO	GO:0002161 (aminoacyl-tRNA deacylase activity); GO:0004832 (valine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006438 (valyl-tRNA aminoacylation)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00133 (tRNA-synt_1); PF08264 (Anticodon_1); PF09334 (tRNA-synt_1g); PF10458 (Val_tRNA-synt_C); PF13603 (tRNA-synt_1_2)
InterPro	-
eggNOG	-
NR	GeneID:131019513

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057804044.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057804044.1`
3	Nucleus	细胞核	0.00000	`XP_057804044.1`
4	Chromosome	染色体	0.00000	`XP_057804044.1`
5	Centromere	着丝粒	0.00000	`XP_057804044.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:24271346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B57,B88,C27,C55
`Chr4:24271723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr4:24272371`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B34
`Chr4:24272371`	`CT`	`C`	1bp_deletion	CDS_variant	1	B34
`Chr4:24272374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr4:24273978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr4:24276390`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr4:24276739`	`GC`	`G`	1bp_deletion	frameshift_variant	55	A18,A9,B1,B100,B101,B102,B103,B106,B107,B108,B111,B118,B12,B121,B127,B13,B134,B138,B139,B15,B17,B23,B29,B37,B4,B40,B41,B5,B50,B52,B55,B57,B60,B64,B77,B93,B98,B99,C1,C12,C15,C16,C20,C24,C27,C49,C5,C51,C56,C72,C83,D1,D2,D7,D8
`Chr4:24276741`	`C`	`CT`	1bp_insertion	frameshift_variant	55	A18,A9,B1,B100,B101,B102,B103,B106,B107,B108,B111,B118,B12,B121,B127,B13,B134,B138,B139,B15,B17,B23,B29,B37,B4,B40,B41,B5,B50,B52,B55,B57,B60,B64,B77,B93,B98,B99,C1,C12,C15,C16,C20,C24,C27,C49,C5,C51,C56,C72,C83,D1,D2,D7,D8
`Chr4:24277501`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C1
`Chr4:24277501`	`AC`	`A`	1bp_deletion	CDS_variant	1	C1
`Chr4:24278629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804044.1

979 aa

490

979

tRNA-synt_1

tRNA-synt_1g

tRNA-synt_1_2

tRNA-synt_1g

Anticodon_1

Val_tRNA-synt_C

PF00133 tRNA-synt_1 76-641 aa PF09334 tRNA-synt_1g 98-153 aa PF13603 tRNA-synt_1_2 311-370 aa PF09334 tRNA-synt_1g 409-483 aa PF09334 tRNA-synt_1g 561-657 aa PF08264 Anticodon_1 698-841 aa PF10458 Val_tRNA-synt_C 904-968 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804044.1`	Pfam	`PF00133`	tRNA-synt_1	Domain	76	641	5.2e-148	493.9	tRNA synthetases class I (I, L, M and V)
`XP_057804044.1`	Pfam	`PF09334`	tRNA-synt_1g	Family	98	153	2e-24	86.8	tRNA synthetases class I (M)
`XP_057804044.1`	Pfam	`PF13603`	tRNA-synt_1_2	Domain	311	370	2e-10	41.2	Leucyl-tRNA synthetase, editing domain
`XP_057804044.1`	Pfam	`PF09334`	tRNA-synt_1g	Family	409	483	2e-24	86.8	tRNA synthetases class I (M)
`XP_057804044.1`	Pfam	`PF09334`	tRNA-synt_1g	Family	561	657	2e-24	86.8	tRNA synthetases class I (M)
`XP_057804044.1`	Pfam	`PF08264`	Anticodon_1	Domain	698	841	2.9e-39	135.0	Anticodon-binding domain of tRNA ligase
`XP_057804044.1`	Pfam	`PF10458`	Val_tRNA-synt_C	Domain	904	968	2.5e-15	57.2	Valyl tRNA synthetase tRNA binding arm

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948061.1
GAAAAATAAAAAACTAACTTACAAAATCTGTAGGCTTTCATCGCAGTGAAGGGGGAAGCTGAAAATGGCGGCCTCCAATTTCTCTCTCTTATCTTCTTCTTGCTCATTACGCATCAAACTTAATCCACTCCTCTTCTCCACGCAACCACGTCGCCGTATCTCTCTTTCTCGCTCTTACTACTTTCGTTTCAGAAACGTCCGCTTCACTACTGTTGCTGGGACGGGGGATAGCGGTGTATTTACATCACCGGAAGTAGCAA...

CDS

1 records

下载 CDS FASTA

LOC131019513
ATGGCGGCCTCCAATTTCTCTCTCTTATCTTCTTCTTGCTCATTACGCATCAAACTTAATCCACTCCTCTTCTCCACGCAACCACGTCGCCGTATCTCTCTTTCTCGCTCTTACTACTTTCGTTTCAGAAACGTCCGCTTCACTACTGTTGCTGGGACGGGGGATAGCGGTGTATTTACATCACCGGAAGTAGCAAAAGCTTTTGATTTTACGGCCGAAGAGAGGATATATAAATGGTGGGAGTCTCAAGGATATTTCAA...

Protein

1 records

下载 Protein FASTA

XP_057804044.1
MAASNFSLLSSSCSLRIKLNPLLFSTQPRRRISLSRSYYFRFRNVRFTTVAGTGDSGVFTSPEVAKAFDFTAEERIYKWWESQGYFKPNLEKGGDPFVVSMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWLPGTDHAGIATQLVVERMLAEEGIKRADLGREEFTKRVWKWKEKYGGTITNQIKRLGASCDWTRECFTLDAQLSRKAIFHPEPVVDAFVRLHEKGLIYQGSYMVNWSPKLQTAVSDLEVEYSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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