当前解析结果
SmilChr04G001498| 统一新 Gene ID | SmilChr04G001498 |
|---|---|
| 名称 | SmilChr04G001498 |
| 描述 | glutathione S-transferase T3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 24519500 - 24520483 / - |
| NCBI Gene ID | LOC131023191 |
|---|---|
| GeneID | 131023191 |
| locus_tag | - |
| NCBI Name | LOC131023191 |
| 原始查询 | SmilChr04G001498 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione S-transferase T3-like |
| 产物 | glutathione S-transferase T3-like |
| Arabidopsis | AT3G47680 (AT3G47680)DNA binding protein [Source:NCBI gene (formerly Entrezgene);Acc:823922] identity=27.3; qcov=0.841; evalue=7.77e-11; confidence=low |
| Rice | Os11g0282700- identity=28.2; qcov=0.596; evalue=3.95e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023191 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808719.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057808719.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057808719.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057808719.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057808719.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:24519545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B24,C64,C72 |
Chr4:24519562 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B125,B42,C61 |
Chr4:24519562 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B42,C61 |
Chr4:24519567 |
T |
TTA |
2bp_insertion | frameshift_variant | 2 | B5,C39 |
Chr4:24519567 |
T |
TTA |
2bp_insertion | CDS_variant | 2 | B5,C39 |
Chr4:24519670 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A14,A5,B109,B110,C26,C46 |
Chr4:24519682 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B58,C25,C36 |
Chr4:24519682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,C25,C36 |
Chr4:24519712 |
CT |
C |
1bp_deletion | frameshift_variant | 7 | B95,C1,C44,C68,C74,C81,C86 |
Chr4:24519739 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B139,B59,B87 |
Chr4:24519739 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B139,B59,B87 |
Chr4:24519760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。