当前解析结果
SmilChr04G001501| 统一新 Gene ID | SmilChr04G001501 |
|---|---|
| 名称 | SmilChr04G001501 |
| 描述 | uncharacterized SmilChr04G001501 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 24614643 - 24615796 / + |
| NCBI Gene ID | LOC131023192 |
|---|---|
| GeneID | 131023192 |
| locus_tag | - |
| NCBI Name | LOC131023192 |
| 原始查询 | SmilChr04G001501 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0292200; species=rice; confidence=weak |
| 产物 | hit=Os12g0292200; species=rice; confidence=weak |
| Arabidopsis | AT2G06105 (AT2G06105)aspartyl protease gag-polyprotein [Source:NCBI gene (formerly Entrezgene);Acc:28717693] identity=34.7; qcov=0.209; evalue=9.15e-06; confidence=weak |
| Rice | Os12g0292200- identity=31.2; qcov=0.27; evalue=1.02e-08; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023192 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057808720.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057808720.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057808720.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808720.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808720.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:24614658 |
C |
T |
EMS_canonical_SNV | stop_gained | 47 | A13,A15,A21,A6,A7,B112,B113,B119,B12,B120,B122,B133,B137,B15,B16,B24,B32,B33,B34,B38,B39,B47,B50,B57,B6,B62,B86,B88,B95,C13,C18,C22,C25,C27,C34,C35,C38,C46,C55,C63,C64,C66,C7,C70,C73,C76,D5 |
Chr4:24614662 |
GT |
G |
1bp_deletion | frameshift_variant | 40 | A14,A19,A2,A6,A8,B10,B104,B115,B130,B132,B136,B19,B36,B37,B45,B53,B61,B7,B72,B73,B8,B80,B83,B87,B88,B97,C20,C28,C3,C30,C38,C40,C42,C50,C71,C78,C81,C83,C84,D9 |
Chr4:24614667 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | A1,A16,B100,B103,B78,B95,C19,C2,C27,C28,C42,C59,C70,D7 |
Chr4:24614682 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | B18,B94,C11,C59,C69,C83 |
Chr4:24614699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B106,B98,C61,D7 |
Chr4:24614700 |
C |
T |
EMS_canonical_SNV | stop_gained | 16 | A1,A19,B105,B2,B25,B27,B32,B37,B44,B51,B57,C3,C31,C73,C8,D2 |
Chr4:24614723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,A8,B18,B52,B94 |
Chr4:24614733 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | C18,C22,C44 |
Chr4:24614733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C18,C22,C44 |
Chr4:24614739 |
C |
T |
EMS_canonical_SNV | stop_gained | 27 | A10,A20,B114,B120,B127,B27,B30,B45,B48,B54,B56,B60,B62,B64,B68,B75,B81,B85,B96,C19,C35,C43,C54,C6,C75,D6,D8 |
Chr4:24614741 |
AC |
A |
1bp_deletion | frameshift_variant | 35 | A11,A15,A19,A20,A22,A4,B1,B108,B120,B138,B19,B44,B53,B58,B74,B78,B9,B95,B97,C17,C19,C28,C30,C31,C35,C36,C37,C45,C46,C50,C53,C72,C74,D10,D5 |
Chr4:24614777 |
G |
A |
EMS_canonical_SNV | stop_gained | 22 | A8,A9,B102,B110,B111,B113,B12,B2,B20,B4,B49,B55,B79,B89,B98,C15,C20,C5,C60,C76,C8,C80 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。