Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001509`

染色体: Chr04 坐标: 24848321-24852797 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001509`
名称	SmilChr04G001509
描述	BTB/POZ and MATH domain-containing protein 3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	24848321 - 24852797 / `-`

ID 对照

NCBI Gene ID	`LOC131019532`
GeneID	`131019532`
locus_tag	`-`
NCBI Name	`LOC131019532`
原始查询	`SmilChr04G001509`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ and MATH domain-containing protein 3
产物	BTB/POZ and MATH domain-containing protein 3
Arabidopsis	`AT2G39760` (BPM3) BTB/POZ/MATH-domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818561] identity=67.7; qcov=0.949; evalue=3.12e-174; confidence=high
Rice	`Os07g0101400` (OsMB9) - identity=66; qcov=0.918; evalue=4.5e-168; confidence=high
GO	GO:0005515 (protein binding); GO:0016567 (protein ubiquitination)
KEGG	-
Pfam	PF00651 (BTB); PF22486 (MATH_2); PF24570 (BACK_BPM_SPOP)
InterPro	-
eggNOG	-
NR	GeneID:131019532

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804065.1`
2	Cytosol	细胞质基质	0.60000	`XP_057804065.1`
3	Cytoplasm	细胞质	0.40000	`XP_057804065.1`
4	Chromosome	染色体	0.00000	`XP_057804065.1`
5	Centromere	着丝粒	0.00000	`XP_057804065.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:24849122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,C19,C54,D8
`Chr4:24850483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:24850554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,C57
`Chr4:24850579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B139,C18,C22,C44
`Chr4:24850604`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B117,B18,B31,C49
`Chr4:24851541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B117,B18,B31,C49
`Chr4:24851546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,C52
`Chr4:24851591`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B117,B18,B31,C49
`Chr4:24851752`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:24852454`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804065.1

436 aa

218

436

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-388 aa

XP_057804066.1

436 aa

218

436

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-388 aa

XP_057804067.1

436 aa

218

436

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-388 aa

XP_057804068.1

435 aa

218

435

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-387 aa

XP_057804069.1

421 aa

210

421

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-373 aa

XP_057804070.1

421 aa

210

421

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-373 aa

XP_057804071.1

421 aa

210

421

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-373 aa

XP_057804072.1

420 aa

210

420

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-372 aa

XP_057804073.1

420 aa

210

420

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-372 aa

XP_057804074.1

420 aa

210

420

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-372 aa

XP_057804075.1

355 aa

178

355

MATH_2

BTB

BACK_BPM_SPOP

PF22486 MATH_2 41-173 aa PF00651 BTB 200-315 aa PF24570 BACK_BPM_SPOP 321-347 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804065.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	3.1e-30	105.9	MATH domain
`XP_057804065.1`	Pfam	`PF00651`	BTB	Domain	200	315	7.4e-27	94.4	BTB/POZ domain
`XP_057804065.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	388	3.2e-20	72.7	BPM/SPOP, BACK domain
`XP_057804066.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	3.1e-30	105.9	MATH domain
`XP_057804066.1`	Pfam	`PF00651`	BTB	Domain	200	315	7.4e-27	94.4	BTB/POZ domain
`XP_057804066.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	388	3.2e-20	72.7	BPM/SPOP, BACK domain
`XP_057804067.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	3.1e-30	105.9	MATH domain
`XP_057804067.1`	Pfam	`PF00651`	BTB	Domain	200	315	7.4e-27	94.4	BTB/POZ domain
`XP_057804067.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	388	3.2e-20	72.7	BPM/SPOP, BACK domain
`XP_057804068.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	3e-30	105.9	MATH domain
`XP_057804068.1`	Pfam	`PF00651`	BTB	Domain	200	315	8.6e-27	94.2	BTB/POZ domain
`XP_057804068.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	387	4.7e-19	69.0	BPM/SPOP, BACK domain
`XP_057804069.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	2.8e-30	106.1	MATH domain
`XP_057804069.1`	Pfam	`PF00651`	BTB	Domain	200	315	8.2e-27	94.3	BTB/POZ domain
`XP_057804069.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	373	2.6e-24	85.9	BPM/SPOP, BACK domain
`XP_057804070.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	2.8e-30	106.1	MATH domain
`XP_057804070.1`	Pfam	`PF00651`	BTB	Domain	200	315	8.2e-27	94.3	BTB/POZ domain
`XP_057804070.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	373	2.6e-24	85.9	BPM/SPOP, BACK domain
`XP_057804071.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	2.8e-30	106.1	MATH domain
`XP_057804071.1`	Pfam	`PF00651`	BTB	Domain	200	315	8.2e-27	94.3	BTB/POZ domain
`XP_057804071.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	373	2.6e-24	85.9	BPM/SPOP, BACK domain
`XP_057804072.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	2.8e-30	106.0	MATH domain
`XP_057804072.1`	Pfam	`PF00651`	BTB	Domain	200	315	8.1e-27	94.3	BTB/POZ domain
`XP_057804072.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	372	3.3e-22	79.1	BPM/SPOP, BACK domain
`XP_057804073.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	2.8e-30	106.0	MATH domain
`XP_057804073.1`	Pfam	`PF00651`	BTB	Domain	200	315	8.1e-27	94.3	BTB/POZ domain
`XP_057804073.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	372	3.3e-22	79.1	BPM/SPOP, BACK domain
`XP_057804074.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	2.8e-30	106.0	MATH domain
`XP_057804074.1`	Pfam	`PF00651`	BTB	Domain	200	315	8.1e-27	94.3	BTB/POZ domain
`XP_057804074.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	372	3.3e-22	79.1	BPM/SPOP, BACK domain
`XP_057804075.1`	Pfam	`PF22486`	MATH_2	Domain	41	173	2.1e-30	106.4	MATH domain
`XP_057804075.1`	Pfam	`PF00651`	BTB	Domain	200	315	5.1e-27	94.9	BTB/POZ domain
`XP_057804075.1`	Pfam	`PF24570`	BACK_BPM_SPOP	Domain	321	347	1.8e-11	44.7	BPM/SPOP, BACK domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

11 records

下载 cDNA FASTA

XM_057948091.1
CTCCACAAATTGGTAGATTTCCTTAAAATTTGTGTACAAAAACCAAAAATTTGATGATTTTGAGGGAAGAAGTGGTGTGGCCCCCCTTTTCAGTTATTTCCCGACTGAGACCAAAATCATGTCTACAAATGCACCCTAATTGTGGATCGATCCACCAAATTCTCACTCCAATTACCAATTCCACCTATCAAAACCCATCCCAAACCTAAACCCGCCAGTTTCTCTAGGGTTTTTCCGTCTGATTTTCACATTCCAATGAA...

XM_057948090.1
CTCCACAAATTGGTAGATTTCCTTAAAATTTGTGTACAAAAACCAAAAATTTGATGATTTTGAGGGAAGAAGTGGTGTGGCCCCCCTTTTCAGTTATTTCCCGACTGAGACCAAAATCATGTCTACAAATGCACCCTAATTGTGGATCGATCCACCAAATTCTCACTCCAATTACCAATTCCACCTATCAAAACCCATCCCAAACCTAAACCCGCCAGTTTCTCTAGGGTTTTTCCGTCTGATTTTCACATTCCAATGAA...

CDS

11 records

下载 CDS FASTA

LOC131019532
ATGATCGTCAACCCCGGCGAACCCTACATCGCGCTCGCCTCGAGTTCCGTATCGGTCACCGGCGAACCCTACATCGTGATCGACTCCAGCTCGAGGTCGATCAACGAGACGGTGAATGGGACGCACCACTTTACCATCCGCGGCTACTCTCTGGCGAAAGGCATGGGCCCCGGAAAGTACGTTTCTTCTGACACCTTCAACATCGGAGGCTACGATTGGGCAATTTACTTCTATCCCGATGGGAAAAACCCCGATGATTC...

Protein

11 records

下载 Protein FASTA

XP_057804065.1
MIVNPGEPYIALASSSVSVTGEPYIVIDSSSRSINETVNGTHHFTIRGYSLAKGMGPGKYVSSDTFNIGGYDWAIYFYPDGKNPDDSSAYVSVFIALASEGTDVRALFELALLDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFRRTALETSDFLKDDCLSMHCTVGVVRTRVEGPKLYSVHVPPSDMGQSLKHLLDAELGCDVVFKVEKESFKAHKLVLAARSPVFRAQFFGLVGNPNSDKVELEDVEPSIF...

XP_057804066.1
MIVNPGEPYIALASSSVSVTGEPYIVIDSSSRSINETVNGTHHFTIRGYSLAKGMGPGKYVSSDTFNIGGYDWAIYFYPDGKNPDDSSAYVSVFIALASEGTDVRALFELALLDQSGKGKHKVHSHFDRALESGPYTLKYRGSMWGYKRFFRRTALETSDFLKDDCLSMHCTVGVVRTRVEGPKLYSVHVPPSDMGQSLKHLLDAELGCDVVFKVEKESFKAHKLVLAARSPVFRAQFFGLVGNPNSDKVELEDVEPSIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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