当前解析结果
SmilChr04G001510| 统一新 Gene ID | SmilChr04G001510 |
|---|---|
| 名称 | SmilChr04G001510 |
| 描述 | uncharacterized SmilChr04G001510 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 24870391 - 24875186 / + |
| NCBI Gene ID | LOC131019534 |
|---|---|
| GeneID | 131019534 |
| locus_tag | - |
| NCBI Name | LOC131019534 |
| 原始查询 | SmilChr04G001510 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007686]; symbol=LEW1; hit=AT1G11755; species=arabidopsis; confidence=high |
| 产物 | Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007686]; symbol=LEW1; hit=AT1G11755; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G11755 (LEW1)Undecaprenyl pyrophosphate synthetase family protein [Source:NCBI gene (formerly Entrezgene);Acc:5007686] identity=45.4; qcov=0.976; evalue=6.71e-71; confidence=high |
| Rice | Os03g0197000- identity=44.8; qcov=0.98; evalue=5.84e-66; confidence=medium |
| GO | GO:0005789 (endoplasmic reticulum membrane); GO:0006486 (GO:0006486); GO:0019408 (GO:0019408); GO:0045547 (ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity); GO:1904423 (dehydrodolichyl diphosphate synthase complex) |
| KEGG | smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019534 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057804076.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057804076.1 |
| 3 | Nucleus membrane | 核膜 | 0.40000 | XP_057804076.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057804076.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057804080.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:24872367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,B89 |
Chr4:24872390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr4:24872594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr4:24873106 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,C52 |
Chr4:24873152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B48,B50,B60,C35 |
Chr4:24873159 |
AGC |
A |
2bp_deletion | frameshift_variant | 1 | B97 |
Chr4:24873159 |
AGC |
A |
2bp_deletion | CDS_variant | 1 | B97 |
Chr4:24873162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B48,B60,C35 |
Chr4:24873174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C26,C78 |
Chr4:24873175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B58,B66 |
Chr4:24873176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,B137 |
Chr4:24873180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B121,C42,C68 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。