当前解析结果
SmilChr04G001511| 统一新 Gene ID | SmilChr04G001511 |
|---|---|
| 名称 | SmilChr04G001511 |
| 描述 | uncharacterized SmilChr04G001511 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 24891208 - 24892246 / - |
| NCBI Gene ID | LOC131023197 |
|---|---|
| GeneID | 131023197 |
| locus_tag | - |
| NCBI Name | LOC131023197 |
| 原始查询 | SmilChr04G001511 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:839262]; symbol=SR34; hit=AT1G02840; species=arabidopsis; confidence=weak |
| 产物 | RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:839262]; symbol=SR34; hit=AT1G02840; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G02840 (SR34)RNA-binding (RRM/RBD/RNP motifs) family protein [Source:NCBI gene (formerly Entrezgene);Acc:839262] identity=82.9; qcov=0.297; evalue=1.19e-12; confidence=weak |
| Rice | Os05g0364600- identity=80; qcov=0.297; evalue=2.95e-12; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023197 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057808723.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057808723.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057808723.1 |
| 4 | Mitochondrion membrane | 线粒体膜 | 0.20000 | XP_057808723.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057808723.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:24891294 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B117,B18,B31,C49 |
Chr4:24891333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B33 |
Chr4:24891335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr4:24891350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B33 |
Chr4:24891363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B22,B33 |
Chr4:24891509 |
CT |
C |
1bp_deletion | frameshift_variant | 5 | B105,B117,B18,B31,C49 |
Chr4:24891509 |
CT |
C |
1bp_deletion | CDS_variant | 5 | B105,B117,B18,B31,C49 |
Chr4:24891555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B54 |
Chr4:24891560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B2,C11,C69,D7 |
Chr4:24891567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B130,B22,B33,C52 |
Chr4:24891568 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B22,B33 |
Chr4:24891624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。