Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001518`

染色体: Chr04 坐标: 25053188-25060265 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001518`
名称	SmilChr04G001518
描述	protein NEDD1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	25053188 - 25060265 / `-`

ID 对照

NCBI Gene ID	`LOC131019540`
GeneID	`131019540`
locus_tag	`-`
NCBI Name	`LOC131019540`
原始查询	`SmilChr04G001518`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein NEDD1-like
产物	protein NEDD1-like
Arabidopsis	`AT5G05970` (NEDD1) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830483] identity=54.7; qcov=1.04; evalue=0; confidence=high
Rice	`Os09g0267500` (OsWD40-168) - identity=52.7; qcov=1.03; evalue=0; confidence=high
GO	GO:0000919 (cell plate assembly); GO:0005515 (protein binding); GO:0005828 (kinetochore microtubule); GO:0010968 (regulation of microtubule nucleation); GO:0032467 (positive regulation of cytokinesis); GO:0060236 (regulation of mitotic spindle organization); GO:0140496 (gamma-tubulin complex binding); GO:2000694 (regulation of phragmoplast microtubule organization)
KEGG	-
Pfam	PF00400 (WD40); PF12894 (ANAPC4_WD40); PF23098 (Beta-prop_NOL10_N)
InterPro	-
eggNOG	-
NR	GeneID:131019540

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Phragmoplast	Phragmoplast	0.60000	`XP_057804088.1`
2	Spindle	Spindle	0.60000	`XP_057804088.1`
3	Cytoskeleton	细胞骨架	0.40000	`XP_057804088.1`
4	Spindle pole	Spindle pole	0.40000	`XP_057804088.1`
5	Cytosol	细胞质基质	0.40000	`XP_057804089.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:25054591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,C57
`Chr4:25055231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr4:25055303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B128,C16,C62,D3
`Chr4:25057344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B118,B93,C24
`Chr4:25057601`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B130,C52,D10
`Chr4:25057836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B98,C80
`Chr4:25058281`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B82
`Chr4:25058847`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B130,C52,D10
`Chr4:25059211`	`A`	`AG`	1bp_insertion	frameshift_variant	11	A6,B125,B127,B129,B23,B33,B72,B9,C52,C54,C8
`Chr4:25059222`	`T`	`TG`	1bp_insertion	frameshift_variant	11	A6,B125,B127,B129,B23,B27,B33,B72,C52,C54,C8
`Chr4:25059235`	`C`	`CAA`	2bp_insertion	frameshift_variant	4	B127,B31,B72,C54
`Chr4:25059235`	`C`	`CAA`	2bp_insertion	CDS_variant	4	B127,B31,B72,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804088.1

783 aa

392

783

WD40

ANAPC4_WD40

Beta-prop_NOL10_N

WD40

PF00400 WD40 39-68 aa PF12894 ANAPC4_WD40 48-138 aa PF23098 Beta-prop_NOL10_N 142-320 aa PF00400 WD40 181-206 aa

XP_057804089.1

778 aa

389

778

WD40

ANAPC4_WD40

Beta-prop_NOL10_N

WD40

PF00400 WD40 39-68 aa PF12894 ANAPC4_WD40 48-138 aa PF23098 Beta-prop_NOL10_N 142-320 aa PF00400 WD40 181-206 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804088.1`	Pfam	`PF00400`	WD40	Repeat	39	68	9.2e-21	74.1	WD domain, G-beta repeat
`XP_057804088.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	48	138	4.5e-12	46.8	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057804088.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	142	320	3.3e-13	50.2	Nucleolar protein 10-like, N-terminal domain
`XP_057804088.1`	Pfam	`PF00400`	WD40	Repeat	181	206	9.2e-21	74.1	WD domain, G-beta repeat
`XP_057804089.1`	Pfam	`PF00400`	WD40	Repeat	39	68	8.7e-21	74.2	WD domain, G-beta repeat
`XP_057804089.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	48	138	4.4e-12	46.8	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057804089.1`	Pfam	`PF23098`	Beta-prop_NOL10_N	Repeat	142	320	3.3e-13	50.3	Nucleolar protein 10-like, N-terminal domain
`XP_057804089.1`	Pfam	`PF00400`	WD40	Repeat	181	206	8.7e-21	74.2	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009100324.1
GTTTTTAGCCCAATTCTAATTTTCAAATTTCTTCCAGAAAAGAAACCATCATTTCATCTCACCTCCCACTCTCTACACAAACACACCCCAAAATCCCCAATTTTCCCCACACACTGTGTTATTGAATCATGAATTTGGCGGAATCGGCCAAGCTGCTGCTGGCGGCCAGCAGCGGTGACACCGTCAAGCTCTTCGACATCTCGGTGGAGCCTCAAAACCCCTGTGTTCTCACCCACTCTCCATCGCCAGGCTCACGCGTG...

XR_009100325.1
TTTTAGCCCAATTCTAATTTTCAAATTTCTTCCAGAAAAGAAACCATCATTTCATCTCACCTCCCACTCTCTACACAAACACACCCCAAAATCCCCAATTTTCCCCACACACTGTGTTATTGAATCATGAATTTGGCGGAATCGGCCAAGCTGCTGCTGGCGGCCAGCAGCGGTGACACCGTCAAGCTCTTCGACATCTCGGTGGAGCCTCAAAACCCCTGTGTTCTCACCCACTCTCCATCGCCAGGCTCACGCGTGAA...

CDS

2 records

下载 CDS FASTA

LOC131019540
ATGAATTTGGCGGAATCGGCCAAGCTGCTGCTGGCGGCCAGCAGCGGTGACACCGTCAAGCTCTTCGACATCTCGGTGGAGCCTCAAAACCCCTGTGTTCTCACCCACTCTCCATCGCCAGGCTCACGCGTGAATTCTGTCAGATGGAACCACAACAATTTGGTATTGGCTAGCGCTGGGGAAGATGGTAAGGTTTCATTATGGCGGAAGAACGGGCAAAGCTTGTGGATGGTGCCGGCCAAGAATGCCAGGGGCGAAAC...

Protein

2 records

下载 Protein FASTA

XP_057804088.1
MNLAESAKLLLAASSGDTVKLFDISVEPQNPCVLTHSPSPGSRVNSVRWNHNNLVLASAGEDGKVSLWRKNGQSLWMVPAKNARGETVEPSESISTISFSNKGSRYLCSGGTGQVVRIWDLQNKRCVKWLKGHTDTITGAMYNCKDEHIASVSRKGDIILHNLASGTKAAELRDPNGQVLGSLDYSRMSRHLLVTAGDDGSIHMWDTTGRSPKASWLKQHSAPTSAVSFSPSNDKIIASVGLDMKLYTFDSGSKKPSSCI...

XP_057804089.1
MNLAESAKLLLAASSGDTVKLFDISVEPQNPCVLTHSPSPGSRVNSVRWNHNNLVLASAGEDGKVSLWRKNGQSLWMVPAKNARGETVEPSESISTISFSNKGSRYLCSGGTGQVVRIWDLQNKRCVKWLKGHTDTITGAMYNCKDEHIASVSRKGDIILHNLASGTKAAELRDPNGQVLGSLDYSRMSRHLLVTAGDDGSIHMWDTTGRSPKASWLKQHSAPTSAVSFSPSNDKIIASVGLDMKLYTFDSGSKKPSSCI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器