当前解析结果
SmilChr04G001544| 统一新 Gene ID | SmilChr04G001544 |
|---|---|
| 名称 | SmilChr04G001544 |
| 描述 | transcription factor MYB25-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 25557571 - 25560885 / - |
| NCBI Gene ID | LOC131019983 |
|---|---|
| GeneID | 131019983 |
| locus_tag | - |
| NCBI Name | LOC131019983 |
| 原始查询 | SmilChr04G001544 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB25-like |
| 产物 | transcription factor MYB25-like |
| Arabidopsis | AT3G55730 (MYB109)myb domain protein 109 [Source:NCBI gene (formerly Entrezgene);Acc:824739] identity=42.9; qcov=0.919; evalue=2.31e-81; confidence=medium |
| Rice | Os01g0850400 (R2R3-MYB)- identity=75.7; qcov=0.264; evalue=7.52e-55; confidence=weak |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019983 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804603.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804603.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804603.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804603.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804603.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:25557884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr4:25557888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B25,C13 |
Chr4:25558066 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,B62 |
Chr4:25558083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B115,B49,B53,C42 |
Chr4:25558256 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:25558271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B136 |
Chr4:25558386 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,B53,C84 |
Chr4:25558422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B54,B65 |
Chr4:25558514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr4:25558562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B65 |
Chr4:25558589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C45 |
Chr4:25560523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804603.1PF00249
Myb_DNA-binding 31-77 aa
PF13921
Myb_DNA-bind_6 34-91 aa
PF00249
Myb_DNA-binding 83-127 aa
PF13921
Myb_DNA-bind_6 86-133 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804603.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 31 | 77 | 4.1e-37 | 126.8 | Myb-like DNA-binding domain |
XP_057804603.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 34 | 91 | 1.2e-26 | 93.3 | Myb-like DNA-binding domain |
XP_057804603.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 83 | 127 | 4.1e-37 | 126.8 | Myb-like DNA-binding domain |
XP_057804603.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 86 | 133 | 1.2e-26 | 93.3 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。