当前解析结果
SmilChr04G001546| 统一新 Gene ID | SmilChr04G001546 |
|---|---|
| 名称 | SmilChr04G001546 |
| 描述 | uncharacterized SmilChr04G001546 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 25570353 - 25571856 / - |
| NCBI Gene ID | LOC131019984 |
|---|---|
| GeneID | 131019984 |
| locus_tag | - |
| NCBI Name | LOC131019984 |
| 原始查询 | SmilChr04G001546 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=low |
| 产物 | Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538]; symbol=AT2G29880; hit=AT2G29880; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G29880 (AT2G29880)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:817538] identity=50; qcov=0.365; evalue=8.91e-18; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019984 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804605.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057804605.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057804605.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057804605.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057804605.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:25570686 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B102,B123,B88,B89 |
Chr4:25570687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B75,B9,C81 |
Chr4:25570690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr4:25570693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr4:25570712 |
G |
A |
EMS_canonical_SNV | stop_gained | 36 | A11,A15,A3,A4,A9,B117,B120,B130,B136,B138,B19,B31,B38,B44,B63,B71,B75,B93,B99,C13,C17,C19,C23,C30,C31,C32,C45,C46,C47,C72,C74,C8,C85,C9,D7,D9 |
Chr4:25570737 |
C |
T |
EMS_canonical_SNV | stop_gained | 8 | B43,B46,B73,B87,C16,C22,C3,D6 |
Chr4:25570759 |
AT |
A |
1bp_deletion | frameshift_variant | 79 | A10,A14,A2,A25,A5,B104,B113,B114,B118,B119,B122,B123,B126,B132,B133,B135,B14,B140,B15,B20,B22,B23,B24,B29,B33,B36,B40,B44,B47,B48,B49,B50,B52,B53,B63,B66,B76,B78,B84,B85,B87,B88,B91,B94,B99,C1,C10,C17,C2,C33,C35,C37,C39,C4,C42,C43,C44,C46,C52,C53,C57,C58,C59,C63,C65,C67,C69,C71,C75,C76,C78,C79,C8,C82,C84,C85,C87,D3,D6 |
Chr4:25570762 |
T |
TA |
1bp_insertion | frameshift_variant | 5 | B125,B20,B49,C76,D6 |
Chr4:25570762 |
T |
TA |
1bp_insertion | CDS_variant | 5 | B125,B20,B49,C76,D6 |
Chr4:25570770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr4:25570790 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A2,A4,B101,B52,B59,B85,C16,C27,C63 |
Chr4:25570807 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。