Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001566`

染色体: Chr04 坐标: 25972892-25980944 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001566`
名称	SmilChr04G001566
描述	xylan O-acetyltransferase 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	25972892 - 25980944 / `+`

ID 对照

NCBI Gene ID	`LOC131020001`
GeneID	`131020001`
locus_tag	`-`
NCBI Name	`LOC131020001`
原始查询	`SmilChr04G001566`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	xylan O-acetyltransferase 1-like
产物	xylan O-acetyltransferase 1-like
Arabidopsis	`AT3G55990` (ESK1) trichome birefringence-like protein (DUF828) [Source:NCBI gene (formerly Entrezgene);Acc:824765] identity=71.4; qcov=1.02; evalue=0; confidence=high
Rice	`Os03g0291800` (OsTBL15) - identity=67; qcov=0.775; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131020001

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057804618.1`
2	Nucleus	细胞核	0.00000	`XP_057804618.1`
3	Chromosome	染色体	0.00000	`XP_057804618.1`
4	Centromere	着丝粒	0.00000	`XP_057804618.1`
5	Chromatin	染色质	0.00000	`XP_057804618.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:25973263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B55,C23
`Chr4:25973493`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B22,B49,C71
`Chr4:25973495`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr4:25973661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:25977825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr4:25977869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr4:25978607`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C36
`Chr4:25978607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr4:25978608`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr4:25980386`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:25980458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,B53,C42
`Chr4:25980479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B58,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804618.1

477 aa

238

477

PMR5N

PC-Esterase

PF14416 PMR5N 128-182 aa PF13839 PC-Esterase 183-471 aa

XP_057804619.1

458 aa

229

458

PMR5N

PC-Esterase

PF14416 PMR5N 109-163 aa PF13839 PC-Esterase 164-452 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804618.1`	Pfam	`PF14416`	PMR5N	Domain	128	182	9.6e-23	81.0	PMR5 N terminal Domain
`XP_057804618.1`	Pfam	`PF13839`	PC-Esterase	Family	183	471	1.4e-95	321.2	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057804619.1`	Pfam	`PF14416`	PMR5N	Domain	109	163	8.9e-23	81.1	PMR5 N terminal Domain
`XP_057804619.1`	Pfam	`PF13839`	PC-Esterase	Family	164	452	1.3e-95	321.4	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948636.1
TCCTCAACTCAACCAAAAGATATCTTTGGCTTAACTCTTCTTCTCCCTCTTTCCCTCTCTCTCTCTCACACACACACACATAGAGAGAGAGAGAGATTAAAATAGAGAGCAAGAGTAGTTAGAAGCTGATGATCAGAAGTAAGCAGGTGAGAAAGACCTCCCTCCCTCCGGCCACCACAGACAGCCCCATCTCACCAAATCCATCTCAAAATAATCCAATTCCACACAACAAACGATTTCCCATCCGTTTATTAAAAAGA...

XM_057948635.1
TCTCTCACACACACACACATAGAGAGAGAGAGAGATTAAAATAGAGAGCAAGAGTAGTTAGAAGCTGATGATCAGAAGTAAGCAGGTGAGAAAGACCTCCCTCCCTCCGGCCACCACAGACAGCCCCATCTCACCAAATCCATCTCAAAATAATCCAATTCCACACAACAAACGATTTCCCATCCGTTTATTAAAAAGACAAAATTAAAGTAAGATCATGTCACTCATTCTCATCTCTCCTCTCTCATTTCCCTCTCTAA...

CDS

2 records

下载 CDS FASTA

LOC131020001
ATGCAGCCCTCTCTCCGCCGCAAGTTCTCCCCGGCGCTCCTCTCCGCGGCCGCCTCCATGAAGCCCGCCGCCTCCGCAGCCCGCAAGGGCGGCAACCTGTCGGCCTTGGTGGTGATCCTCTCCATCTTCCTATTCGGGTGCTTCATGTACAACGAGGACGTCAAGTCCCTCGCCGAGTTCCCCTTCTCCCGCCCCAAAGAGGACACCCGCCTCGACACCACCGTCTCCGTCGTCATGAACGCCAGGACAGTCGTCGAAAC...

LOC131020001
ATGAAGCCCGCCGCCTCCGCAGCCCGCAAGGGCGGCAACCTGTCGGCCTTGGTGGTGATCCTCTCCATCTTCCTATTCGGGTGCTTCATGTACAACGAGGACGTCAAGTCCCTCGCCGAGTTCCCCTTCTCCCGCCCCAAAGAGGACACCCGCCTCGACACCACCGTCTCCGTCGTCATGAACGCCAGGACAGTCGTCGAAACGGAGGTGGAGGCTCACAAACCAGAAACCACCAAGGAAGAGATTAAGATTCAGTTGCC...

Protein

2 records

下载 Protein FASTA

XP_057804618.1
MQPSLRRKFSPALLSAAASMKPAASAARKGGNLSALVVILSIFLFGCFMYNEDVKSLAEFPFSRPKEDTRLDTTVSVVMNARTVVETEVEAHKPETTKEEIKIQLPLPVEEEEEDEDDDDGVEIPPEGCDLFNGQWVFDNTSSYPIYKEEECEFLTAQVTCLRNGRRDSLYQNWRWQPNDCSLPKFKAKLLLEKMRNKRLMFVGDSLNRNQWESMICLVQSVVPPGRKSLNKNGSLSVFRIEDYNATVEFYWAPFLVESN...

XP_057804619.1
MKPAASAARKGGNLSALVVILSIFLFGCFMYNEDVKSLAEFPFSRPKEDTRLDTTVSVVMNARTVVETEVEAHKPETTKEEIKIQLPLPVEEEEEDEDDDDGVEIPPEGCDLFNGQWVFDNTSSYPIYKEEECEFLTAQVTCLRNGRRDSLYQNWRWQPNDCSLPKFKAKLLLEKMRNKRLMFVGDSLNRNQWESMICLVQSVVPPGRKSLNKNGSLSVFRIEDYNATVEFYWAPFLVESNSDDPNMHSILNRIIMPSSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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