Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001573`

染色体: Chr04 坐标: 26099315-26127070 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001573`
名称	SmilChr04G001573
描述	anaphase-promoting complex subunit 1
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	26099315 - 26127070 / `-`

ID 对照

NCBI Gene ID	`LOC131020008`
GeneID	`131020008`
locus_tag	`-`
NCBI Name	`LOC131020008`
原始查询	`SmilChr04G001573`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	anaphase-promoting complex subunit 1
产物	anaphase-promoting complex subunit 1
Arabidopsis	`AT5G05560` (EMB2771) E3 ubiquitin ligase [Source:NCBI gene (formerly Entrezgene);Acc:830439] identity=60.1; qcov=1; evalue=0; confidence=high
Rice	`Os05g0354300` (APC1) - identity=64.4; qcov=0.502; evalue=0; confidence=medium
GO	GO:0005680 (anaphase-promoting complex); GO:0007091 (metaphase/anaphase transition of mitotic cell cycle); GO:0031145 (anaphase-promoting complex-dependent catabolic process); GO:0060090 (molecular adaptor activity); GO:0070979 (protein K11-linked ubiquitination)
KEGG	smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01851 (PC_rep); PF12859 (ANAPC1); PF18122 (APC1_C); PF20518 (Apc1_MidN); PF21282 (APC1_3rd); PF27562 (APC1_4th); PF29300 (APC1_5th)
InterPro	-
eggNOG	-
NR	GeneID:131020008

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057804624.1`
2	Cytoplasm	细胞质	0.60000	`XP_057804624.1`
3	Chromosome	染色体	0.00000	`XP_057804624.1`
4	Centromere	着丝粒	0.00000	`XP_057804624.1`
5	Chromatin	染色质	0.00000	`XP_057804624.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:26099745`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr4:26099992`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:26100055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:26100059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:26102201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B25,B58,B66,C13
`Chr4:26102918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B46,B55,C23
`Chr4:26103017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr4:26106329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,B25,B58,B66,C13
`Chr4:26106364`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C75
`Chr4:26108650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:26108903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:26109178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,B55,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804624.1

1818 aa

909

1818

ANAPC1

Apc1_MidN

APC1_4th

APC1_5th

PC_rep

APC1_3rd

APC1_C

PF12859 ANAPC1 36-257 aa PF12859 ANAPC1 296-508 aa PF20518 Apc1_MidN 517-783 aa PF27562 APC1_4th 856-1045 aa PF29300 APC1_5th 1051-1463 aa PF01851 PC_rep 1302-1334 aa PF21282 APC1_3rd 1465-1529 aa PF18122 APC1_C 1602-1768 aa

XP_057804625.1

1818 aa

909

1818

ANAPC1

Apc1_MidN

APC1_4th

APC1_5th

PC_rep

APC1_3rd

APC1_C

XP_057804626.1

1809 aa

904

1809

ANAPC1

Apc1_MidN

APC1_4th

APC1_5th

PC_rep

APC1_3rd

APC1_C

PF12859 ANAPC1 36-257 aa PF12859 ANAPC1 296-508 aa PF20518 Apc1_MidN 517-783 aa PF27562 APC1_4th 856-1045 aa PF29300 APC1_5th 1051-1454 aa PF01851 PC_rep 1293-1325 aa PF21282 APC1_3rd 1456-1520 aa PF18122 APC1_C 1593-1759 aa

XP_057804627.1

1818 aa

909

1818

ANAPC1

Apc1_MidN

APC1_4th

APC1_5th

PC_rep

APC1_3rd

APC1_C

XP_057804628.1

1809 aa

904

1809

ANAPC1

Apc1_MidN

APC1_4th

APC1_5th

PC_rep

APC1_3rd

APC1_C

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804624.1`	Pfam	`PF12859`	ANAPC1	Repeat	36	257	1.4e-57	196.4	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804624.1`	Pfam	`PF12859`	ANAPC1	Repeat	296	508	1.4e-57	196.4	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804624.1`	Pfam	`PF20518`	Apc1_MidN	Repeat	517	783	5.4e-22	79.2	Anaphase-promoting complex subunit 1 middle domain
`XP_057804624.1`	Pfam	`PF27562`	APC1_4th	Repeat	856	1045	8.5e-64	215.5	APC1 fourth domain
`XP_057804624.1`	Pfam	`PF29300`	APC1_5th	Repeat	1051	1463	5e-112	375.0	APC1 fifth domain
`XP_057804624.1`	Pfam	`PF01851`	PC_rep	Repeat	1302	1334	4.2e-07	30.8	Proteasome/cyclosome repeat
`XP_057804624.1`	Pfam	`PF21282`	APC1_3rd	Domain	1465	1529	9.5e-16	58.8	APC1 beta sandwich domain
`XP_057804624.1`	Pfam	`PF18122`	APC1_C	Domain	1602	1768	3.3e-38	132.1	Anaphase-promoting complex sub unit 1 C-terminal domain
`XP_057804625.1`	Pfam	`PF12859`	ANAPC1	Repeat	36	257	1.4e-57	196.4	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804625.1`	Pfam	`PF12859`	ANAPC1	Repeat	296	508	1.4e-57	196.4	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804625.1`	Pfam	`PF20518`	Apc1_MidN	Repeat	517	783	5.4e-22	79.2	Anaphase-promoting complex subunit 1 middle domain
`XP_057804625.1`	Pfam	`PF27562`	APC1_4th	Repeat	856	1045	8.5e-64	215.5	APC1 fourth domain
`XP_057804625.1`	Pfam	`PF29300`	APC1_5th	Repeat	1051	1463	5e-112	375.0	APC1 fifth domain
`XP_057804625.1`	Pfam	`PF01851`	PC_rep	Repeat	1302	1334	4.2e-07	30.8	Proteasome/cyclosome repeat
`XP_057804625.1`	Pfam	`PF21282`	APC1_3rd	Domain	1465	1529	9.5e-16	58.8	APC1 beta sandwich domain
`XP_057804625.1`	Pfam	`PF18122`	APC1_C	Domain	1602	1768	3.3e-38	132.1	Anaphase-promoting complex sub unit 1 C-terminal domain
`XP_057804626.1`	Pfam	`PF12859`	ANAPC1	Repeat	36	257	1.4e-57	196.5	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804626.1`	Pfam	`PF12859`	ANAPC1	Repeat	296	508	1.4e-57	196.5	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804626.1`	Pfam	`PF20518`	Apc1_MidN	Repeat	517	783	5.4e-22	79.2	Anaphase-promoting complex subunit 1 middle domain
`XP_057804626.1`	Pfam	`PF27562`	APC1_4th	Repeat	856	1045	8.2e-64	215.5	APC1 fourth domain
`XP_057804626.1`	Pfam	`PF29300`	APC1_5th	Repeat	1051	1454	1.6e-126	422.7	APC1 fifth domain
`XP_057804626.1`	Pfam	`PF01851`	PC_rep	Repeat	1293	1325	6.8e-07	30.1	Proteasome/cyclosome repeat
`XP_057804626.1`	Pfam	`PF21282`	APC1_3rd	Domain	1456	1520	9.4e-16	58.8	APC1 beta sandwich domain
`XP_057804626.1`	Pfam	`PF18122`	APC1_C	Domain	1593	1759	3.2e-38	132.1	Anaphase-promoting complex sub unit 1 C-terminal domain
`XP_057804627.1`	Pfam	`PF12859`	ANAPC1	Repeat	36	257	1.4e-57	196.4	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804627.1`	Pfam	`PF12859`	ANAPC1	Repeat	296	508	1.4e-57	196.4	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804627.1`	Pfam	`PF20518`	Apc1_MidN	Repeat	517	783	5.4e-22	79.2	Anaphase-promoting complex subunit 1 middle domain
`XP_057804627.1`	Pfam	`PF27562`	APC1_4th	Repeat	856	1045	8.5e-64	215.5	APC1 fourth domain
`XP_057804627.1`	Pfam	`PF29300`	APC1_5th	Repeat	1051	1463	5e-112	375.0	APC1 fifth domain
`XP_057804627.1`	Pfam	`PF01851`	PC_rep	Repeat	1302	1334	4.2e-07	30.8	Proteasome/cyclosome repeat
`XP_057804627.1`	Pfam	`PF21282`	APC1_3rd	Domain	1465	1529	9.5e-16	58.8	APC1 beta sandwich domain
`XP_057804627.1`	Pfam	`PF18122`	APC1_C	Domain	1602	1768	3.3e-38	132.1	Anaphase-promoting complex sub unit 1 C-terminal domain
`XP_057804628.1`	Pfam	`PF12859`	ANAPC1	Repeat	36	257	1.4e-57	196.5	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804628.1`	Pfam	`PF12859`	ANAPC1	Repeat	296	508	1.4e-57	196.5	Anaphase-promoting complex subunit 1 WD40 beta-propeller domain
`XP_057804628.1`	Pfam	`PF20518`	Apc1_MidN	Repeat	517	783	5.4e-22	79.2	Anaphase-promoting complex subunit 1 middle domain
`XP_057804628.1`	Pfam	`PF27562`	APC1_4th	Repeat	856	1045	8.2e-64	215.5	APC1 fourth domain
`XP_057804628.1`	Pfam	`PF29300`	APC1_5th	Repeat	1051	1454	1.6e-126	422.7	APC1 fifth domain
`XP_057804628.1`	Pfam	`PF01851`	PC_rep	Repeat	1293	1325	6.8e-07	30.1	Proteasome/cyclosome repeat
`XP_057804628.1`	Pfam	`PF21282`	APC1_3rd	Domain	1456	1520	9.4e-16	58.8	APC1 beta sandwich domain
`XP_057804628.1`	Pfam	`PF18122`	APC1_C	Domain	1593	1759	3.2e-38	132.1	Anaphase-promoting complex sub unit 1 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057948645.1
TAAATCTTGCGCCGCTTCTTTCTTCTCTCTCTTCTCACTCTCGTCTCCTCTCTCTCGCATTCTTGGCAGCGCCGCTTTCTATCTCTCTCACTCACTCTCTCTCTCTCTCTCGTCTCCGGCCTCTCCGTGCCGCCGCCCTCGTCGGCTTGCTCAACCCTCTCGTCTTCCAGTTTCTCTCATTTCCTCTTTCAGTGCGCCGCTGCCCTCCCAGACTCGCCCAGTCTTCCCCGTCGCCCCGCCTCCTCCGTCCTTGACGCCTG...

XM_057948644.1
TAAATCTTGCGCCGCTTCTTTCTTCTCTCTCTTCTCACTCTCGTCTCCTCTCTCTCGCATTCTTGGCAGCGCCGCTTTCTATCTCTCTCACTCACTCTCTCTCTCTCTCTCGTCTCCGGCCTCTCCGTGCCGCCGCCCTCGTCGGCTTGCTCAACCCTCTCGTCTTCCAGTTTCTCTCATTTCCTCTTTCAGTGCGCCGCTGCCCTCCCAGACTCGCCCAGTCTTCCCCGTCGCCCCGCCTCCTCCGTCCTTGACGCCTG...

CDS

5 records

下载 CDS FASTA

LOC131020008
ATGCCTCACTGCAGCGTTCGGGAACTCACCGTACTTACGGAGTTCAGGCCGTTTGGATTGACCGCCGAGGCATTGGATGGCGGTAGTCCTTCCGGAGATGATGACAACGATTACCATTACTTCCTCTTCGGCCCGCAGGTTGCCAAACAGCGAGATGAGACCGCCGAGGTTGAAGATGCTTCGAGCAGCGATCACGAACTATTCGTCAGGGGAAATAGAATCATATGGAGTGCTGGCTCTAAAGTTTATAAGAGGTTTAC...

Protein

5 records

下载 Protein FASTA

XP_057804624.1
MPHCSVRELTVLTEFRPFGLTAEALDGGSPSGDDDNDYHYFLFGPQVAKQRDETAEVEDASSSDHELFVRGNRIIWSAGSKVYKRFTLPSKVIKVCWTRMSDISEALLCVLQVDRLTIYGIAGEVVSVPLPYAVTSIWSLPFGLLLQRASEGSLLTNITLSSSNPFLNARDVFRQKRDSYTPTHMFDYCTRSDGTSMSSHMILKDPLEDPQITYIEERGKLNLMWEFDERTIWTSDCVPLMASYNKGKMQHSLWVVEVNG...

XP_057804625.1
MPHCSVRELTVLTEFRPFGLTAEALDGGSPSGDDDNDYHYFLFGPQVAKQRDETAEVEDASSSDHELFVRGNRIIWSAGSKVYKRFTLPSKVIKVCWTRMSDISEALLCVLQVDRLTIYGIAGEVVSVPLPYAVTSIWSLPFGLLLQRASEGSLLTNITLSSSNPFLNARDVFRQKRDSYTPTHMFDYCTRSDGTSMSSHMILKDPLEDPQITYIEERGKLNLMWEFDERTIWTSDCVPLMASYNKGKMQHSLWVVEVNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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