当前解析结果
SmilChr04G001595| 统一新 Gene ID | SmilChr04G001595 |
|---|---|
| 名称 | SmilChr04G001595 |
| 描述 | pentatricopeptide repeat-containing protein At3g56030, mitochondrial |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 26578752 - 26579789 / + |
| NCBI Gene ID | LOC131020024 |
|---|---|
| GeneID | 131020024 |
| locus_tag | - |
| NCBI Name | LOC131020024 |
| 原始查询 | SmilChr04G001595 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At3g56030, mitochondrial |
| 产物 | pentatricopeptide repeat-containing protein At3g56030%2C mitochondrial |
| Arabidopsis | AT3G56030 (AT3G56030)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824769] identity=38.9; qcov=1; evalue=3.14e-73; confidence=medium |
| Rice | Os03g0597200 (YSA)- identity=26.6; qcov=0.827; evalue=2.35e-25; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020024 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057804636.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804636.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804636.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804636.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:26578922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr4:26578950 |
CG |
C |
1bp_deletion | frameshift_variant | 5 | A13,B104,B25,C13,D11 |
Chr4:26578950 |
CG |
C |
1bp_deletion | CDS_variant | 5 | A13,B104,B25,C13,D11 |
Chr4:26578996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B89,C26 |
Chr4:26579036 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B40,B88 |
Chr4:26579123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B36,C33,C42,C57 |
Chr4:26579180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,B59 |
Chr4:26579270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:26579321 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr4:26579384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:26579621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B52,B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804636.1PF23276
TPR_24 101-194 aa
PF17177
PPR_long 116-233 aa
PF13812
PPR_3 132-180 aa
PF01535
PPR 174-203 aa
PF13812
PPR_3 195-253 aa
PF01535
PPR 209-238 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804636.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 101 | 194 | 3.8e-11 | 43.8 | Pentatricopeptide repeat-containing protein |
XP_057804636.1 |
Pfam | PF17177 |
PPR_long | Repeat | 116 | 233 | 4.8e-08 | 33.3 | Pentacotripeptide-repeat region of PRORP |
XP_057804636.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 132 | 180 | 1.3e-10 | 41.9 | Pentatricopeptide repeat domain |
XP_057804636.1 |
Pfam | PF01535 |
PPR | Repeat | 174 | 203 | 3.5e-11 | 43.3 | PPR repeat |
XP_057804636.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 195 | 253 | 1.3e-10 | 41.9 | Pentatricopeptide repeat domain |
XP_057804636.1 |
Pfam | PF01535 |
PPR | Repeat | 209 | 238 | 3.5e-11 | 43.3 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。