Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001599`

染色体: Chr04 坐标: 26640200-26652732 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001599`
名称	SmilChr04G001599
描述	UTP--glucose-1-phosphate uridylyltransferase 3, chloroplastic
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	26640200 - 26652732 / `-`

ID 对照

NCBI Gene ID	`LOC131020029`
GeneID	`131020029`
locus_tag	`-`
NCBI Name	`LOC131020029`
原始查询	`SmilChr04G001599`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UTP--glucose-1-phosphate uridylyltransferase 3, chloroplastic
产物	UTP--glucose-1-phosphate uridylyltransferase 3%2C chloroplastic
Arabidopsis	`AT3G56040` (UGP3) UDP-glucose pyrophosphorylase 3 [Source:NCBI gene (formerly Entrezgene);Acc:824770] identity=62.3; qcov=0.946; evalue=0; confidence=high
Rice	`Os05g0468600` - identity=57.9; qcov=0.95; evalue=0; confidence=high
GO	GO:0003977 (UDP-N-acetylglucosamine diphosphorylase activity); GO:0006048 (UDP-N-acetylglucosamine biosynthetic process)
KEGG	smil00541 (Biosynthesis of various nucleotide sugars - Salvia miltiorrhiza (redroot sage)); smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00566 (Sulfoquinovose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF25441 (Hexapep_UGP3_C)
InterPro	-
eggNOG	-
NR	GeneID:131020029

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057804638.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057804638.1`
3	Cytosol	细胞质基质	0.20000	`XP_057804638.1`
4	Nucleus	细胞核	0.00000	`XP_057804638.1`
5	Chromosome	染色体	0.00000	`XP_057804638.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:26642074`	`T`	`TC`	1bp_insertion	frameshift_variant	1	C87
`Chr4:26642074`	`T`	`TC`	1bp_insertion	CDS_variant	1	C87
`Chr4:26642105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B136,B22,B83,C59
`Chr4:26646271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B120,B62
`Chr4:26647411`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B63,C53,C85
`Chr4:26647455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B25,C13,D11
`Chr4:26647457`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B98,C80
`Chr4:26647457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B98,C80
`Chr4:26648461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,C36
`Chr4:26649400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr4:26649913`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B98,C80
`Chr4:26649949`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B22,B83,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804638.1

871 aa

436

871

Hexapep_UGP3_C

PF25441 Hexapep_UGP3_C 706-868 aa

XP_057804639.1

867 aa

434

867

Hexapep_UGP3_C

PF25441 Hexapep_UGP3_C 702-864 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804638.1`	Pfam	`PF25441`	Hexapep_UGP3_C	Repeat	706	868	1.1e-70	237.4	UGP3-like, C-terminal hexapeptide repeats
`XP_057804639.1`	Pfam	`PF25441`	Hexapep_UGP3_C	Repeat	702	864	1.1e-70	237.5	UGP3-like, C-terminal hexapeptide repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948656.1
TTCGAGTTTGTTAACGCAAAAATCAGTTAAACGTACATGTCTAGACTGCACACTGCATCAAAAGCACAGTAGATTACCCCTTTCGAAAAGCTCAGCATATGCTTCCCGCATCTTCGGCTTATCCGCGCTAAACATTCCCACATCGTTTTCCCCTACAAAAAATACACTCACTCACACACACAGTCGAATACAAACTCTCTCTCTTTCCCTCTCTCTACAATGGCGCGAACCAATTATTCGGTTCTGCGCCACAATAATCC...

XM_057948655.1
TTCGAGTTTGTTAACGCAAAAATCAGTTAAACGTACATGTCTAGACTGCACACTGCATCAAAAGCACAGTAGATTACCCCTTTCGAAAAGCTCAGCATATGCTTCCCGCATCTTCGGCTTATCCGCGCTAAACATTCCCACATCGTTTTCCCCTACAAAAAATACACTCACTCACACACACAGTCGAATACAAACTCTCTCTCTTTCCCTCTCTCTACAATGGCGCGAACCAATTATTCGGTTCTGCGCCACAATAATCC...

CDS

2 records

下载 CDS FASTA

LOC131020029
ATGGCGCGAACCAATTATTCGGTTCTGCGCCACAATAATCCTCTCTTCGCCTTCAATTCAAGGCCATCTAATTCCTTGTTCTTCTCCAAGTATTTCTCTCGCCAATCCAACTACTTTTTATCTTCTTCAATTTTCTCCTCGCCGAATCAGTTGCATTTACTCACGCAGTCCCCGAGCTCATGTGCTTCAATCACGCGAGTTTCCACCGCGCCGGTGGAGTACGCACCGCCGCCGGACCTTAGTTTTTATAAGGAAATTGC...

Protein

2 records

下载 Protein FASTA

XP_057804638.1
MARTNYSVLRHNNPLFAFNSRPSNSLFFSKYFSRQSNYFLSSSIFSSPNQLHLLTQSPSSCASITRVSTAPVEYAPPPDLSFYKEIARLKGLREALSGCRTLTEKLRTIDSDSRVKSFLKSWRNQFAGVNLSDYELFMLKCVAAAGQEHVLGEFGRELESGELELRMSSLKSALYALAETIENWDGNGGARSRALYEEDRAALWSLLKMLGEVEQFYNCIGGIIGYQISVLELLAQSTQEGHTPHTTHWNGQTAKSLRCQ...

XP_057804639.1
MARTNYSVLRHNNPLFAFNSRPSNSLFFSKYFSRQSNYFLSSSIFSSPNQLHLLTQSPSSCASITRVSTAPVEYAPPPDLSFYKEIARLKGLREALSGCRTLTEKLRTIDSDSRVKSFLKSWRNQFAGVNLSDYELFMLKCVAAAGQEHVLGEFGRELESGELELRMSSLKSALYALAETIENWDGNGGARSRALYEEDRAALWSLLKMLGEVEQFYNCIGGIIGYQISVLELLAQSTQEGHTPHTTHWNGQTAKSLRCQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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