Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001601

染色体: Chr04 坐标: 26688064-26693068 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001601
名称SmilChr04G001601
描述inactive receptor-like serine/threonine-protein kinase At2g40270
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向26688064 - 26693068 / -

ID 对照

NCBI Gene IDLOC131020032
GeneID131020032
locus_tag-
NCBI NameLOC131020032
原始查询SmilChr04G001601

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述inactive receptor-like serine/threonine-protein kinase At2g40270
产物inactive receptor-like serine/threonine-protein kinase At2g40270
ArabidopsisAT5G45840 (AT5G45840)
Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834624]
identity=41.1; qcov=1.05; evalue=3.19e-152; confidence=medium
RiceOs05g0471000
-
identity=41.1; qcov=0.992; evalue=1.63e-145; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro-
eggNOG-
NRGeneID:131020032

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057804644.1
2 Nucleus 细胞核 0.00000 XP_057804644.1
3 Chromosome 染色体 0.00000 XP_057804644.1
4 Centromere 着丝粒 0.00000 XP_057804644.1
5 Chromatin 染色质 0.00000 XP_057804644.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:26688501 A AG 1bp_insertion frameshift_variant 1 D10
Chr4:26688501 A AG 1bp_insertion CDS_variant 1 D10
Chr4:26688533 C T EMS_canonical_SNV CDS_variant 1 B64
Chr4:26688596 C T EMS_canonical_SNV CDS_variant 1 B104
Chr4:26688819 G A EMS_canonical_SNV CDS_variant 2 B75,C6
Chr4:26688871 C T EMS_canonical_SNV CDS_variant 4 B112,B90,B92,C81
Chr4:26688999 TC T 1bp_deletion frameshift_variant 1 B34
Chr4:26688999 TC T 1bp_deletion CDS_variant 1 B34
Chr4:26689351 G A EMS_canonical_SNV CDS_variant 1 B5
Chr4:26689665 G A EMS_canonical_SNV CDS_variant 4 B135,B42,B43,C58
Chr4:26690241 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:26690279 C T EMS_canonical_SNV CDS_variant 1 C10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804644.1
612 aa
N
1
306
612
LRRNT_2
LRR_1
PK_Tyr_Ser-Thr
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-76 aa PF00560 LRR_1 127-147 aa PF07714 PK_Tyr_Ser-Thr 337-491 aa PF00069 Pkinase 339-490 aa PF07714 PK_Tyr_Ser-Thr 495-584 aa
XP_057804645.1
612 aa
N
1
306
612
LRRNT_2
LRR_1
PK_Tyr_Ser-Thr
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-76 aa PF00560 LRR_1 127-147 aa PF07714 PK_Tyr_Ser-Thr 337-491 aa PF00069 Pkinase 339-490 aa PF07714 PK_Tyr_Ser-Thr 495-584 aa
XP_057804646.1
610 aa
N
1
305
610
LRRNT_2
LRR_1
PK_Tyr_Ser-Thr
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 31-74 aa PF00560 LRR_1 125-145 aa PF07714 PK_Tyr_Ser-Thr 335-489 aa PF00069 Pkinase 337-488 aa PF07714 PK_Tyr_Ser-Thr 493-582 aa
XP_057804647.1
611 aa
N
1
306
611
LRRNT_2
LRR_1
PK_Tyr_Ser-Thr
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-76 aa PF00560 LRR_1 127-147 aa PF07714 PK_Tyr_Ser-Thr 336-490 aa PF00069 Pkinase 338-489 aa PF07714 PK_Tyr_Ser-Thr 494-583 aa
XP_057804648.1
611 aa
N
1
306
611
LRRNT_2
LRR_1
PK_Tyr_Ser-Thr
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 33-76 aa PF00560 LRR_1 127-147 aa PF07714 PK_Tyr_Ser-Thr 336-490 aa PF00069 Pkinase 338-489 aa PF07714 PK_Tyr_Ser-Thr 494-583 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804644.1 Pfam PF08263 LRRNT_2 Family 33 76 2.2e-08 35.0 Leucine rich repeat N-terminal domain
XP_057804644.1 Pfam PF00560 LRR_1 Repeat 127 147 0.0002 21.5 Leucine Rich Repeat
XP_057804644.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 337 491 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804644.1 Pfam PF00069 Pkinase Domain 339 490 3.1e-19 70.1 Protein kinase domain
XP_057804644.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 495 584 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804645.1 Pfam PF08263 LRRNT_2 Family 33 76 2.2e-08 35.0 Leucine rich repeat N-terminal domain
XP_057804645.1 Pfam PF00560 LRR_1 Repeat 127 147 0.0002 21.5 Leucine Rich Repeat
XP_057804645.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 337 491 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804645.1 Pfam PF00069 Pkinase Domain 339 490 3.1e-19 70.1 Protein kinase domain
XP_057804645.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 495 584 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804646.1 Pfam PF08263 LRRNT_2 Family 31 74 2.1e-08 35.0 Leucine rich repeat N-terminal domain
XP_057804646.1 Pfam PF00560 LRR_1 Repeat 125 145 0.0002 21.6 Leucine Rich Repeat
XP_057804646.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 335 489 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804646.1 Pfam PF00069 Pkinase Domain 337 488 3e-19 70.1 Protein kinase domain
XP_057804646.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 493 582 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804647.1 Pfam PF08263 LRRNT_2 Family 33 76 2.2e-08 35.0 Leucine rich repeat N-terminal domain
XP_057804647.1 Pfam PF00560 LRR_1 Repeat 127 147 0.0002 21.6 Leucine Rich Repeat
XP_057804647.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 336 490 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804647.1 Pfam PF00069 Pkinase Domain 338 489 3.1e-19 70.1 Protein kinase domain
XP_057804647.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 494 583 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804648.1 Pfam PF08263 LRRNT_2 Family 33 76 2.2e-08 35.0 Leucine rich repeat N-terminal domain
XP_057804648.1 Pfam PF00560 LRR_1 Repeat 127 147 0.0002 21.6 Leucine Rich Repeat
XP_057804648.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 336 490 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase
XP_057804648.1 Pfam PF00069 Pkinase Domain 338 489 3.1e-19 70.1 Protein kinase domain
XP_057804648.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 494 583 1.8e-26 93.7 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057948664.1
CTTCCACTACATTAATAGCTATTGTATATTCATACAATCACCCTCAAATTCTTATTATACACCATACAGACTACTTAGTACTCATGCAATCAATCCCACAAATTCAACTGTATATACATCACACCCCACCAACACTCCATAATTTCAATGTCTTAATCTTTTTCCAAATAGCAATACTTTTCAATTCTGAGAAAAAATCATCCCAGATTAATTTGATTAGCATCACACCCTTTGATCTATGCAAACTAATCACAGTCATT...
XM_057948661.1
CATACAATCACCCTCAAATTCTTATTATACACCATACAGACTACTTAGTACTCATGCAATCAATCCCACAAATTCAACTGTATATACATCACACCCCACCAACACTCCATAATTTCAATGTCTTAATCTTTTTCCAAATAGCAATACTTTTCAATTCTGAGAAAAAATCATCCCAGATTAATTTGATTAGCATCACACCCTTTGATCTATGCAAACTAATCACAGTCATTTTCTGTGTTTTGTTTTTTCGTAAAGATTCA...

CDS

5 records

下载 CDS FASTA
LOC131020032
ATGGAGCAGTTTTTCCGAGCTAAAAGTCTTCTGTTGGAGGCGTTACTCTTGTGCTGCCTTCACCTGCTCAATCTGAATTCTTGCTTCTCTCTCAATGATGAAGGCGTGGCTTTGCTGAGGCTTAGGAACAGAGTGGCAAGCGATCCAGAAGGGGCTCTGTCGAATTGGATTGATAAAAATGGAGTGGAAACCCCGTGTTGTTGGTTTGGAGTTGAGTGCTCAAAAGGCCATGTTGTAGCCTTGAACCTCAAAGATCTGCG...
LOC131020032
ATGAAAATGGAGCAGTTTTTCCGAGCTAAAAGTCTTCTGTTGGAGGCGTTACTCTTGTGCTGCCTTCACCTGCTCAATCTGAATTCTTGCTTCTCTCTCAATGATGAAGGCGTGGCTTTGCTGAGGCTTAGGAACAGAGTGGCAAGCGATCCAGAAGGGGCTCTGTCGAATTGGATTGATAAAAATGGAGTGGAAACCCCGTGTTGTTGGTTTGGAGTTGAGTGCTCAAAAGGCCATGTTGTAGCCTTGAACCTCAAAGA...

Protein

5 records

下载 Protein FASTA
XP_057804644.1
MKMEQFFRAKSLLLEALLLCCLHLLNLNSCFSLNDEGVALLRLRNRVASDPEGALSNWIDKNGVETPCCWFGVECSKGHVVALNLKDLRLSGTLPPEMGNLLHANYIILRNNSFSGVIPEEMANLRQLRVLDLRHNNFSGHLHNYFSPPIVLLDNDQLLSTTTTSSTSQLVISRRSSEKTGNVGRRKLRQDSPSVQMEKLFWFPPPSPESTLPPPNPVPAPETAPAPLPPATKPSSPSPSPSSSSPPSPVTSISPSHPPG...
XP_057804645.1
MKMEQFFRAKSLLLEALLLCCLHLLNLNSCFSLNDEGVALLRLRNRVASDPEGALSNWIDKNGVETPCCWFGVECSKGHVVALNLKDLRLSGTLPPEMGNLLHANYIILRNNSFSGVIPEEMANLRQLRVLDLRHNNFSGHLHNYFSPPIVLLDNDQLLSTTTTSSTSQLVISRRSSEKTGNVGRRKLRQDSPSVQMEKLFWFPPPSPESTLPPPNPVPAPETAPAPLPPATKPSSPSPSPSSSSPPSPVTSISPSHPPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器