当前解析结果
SmilChr04G001607| 统一新 Gene ID | SmilChr04G001607 |
|---|---|
| 名称 | SmilChr04G001607 |
| 描述 | eukaryotic translation initiation factor 2 subunit alpha homolog |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 26766050 - 26769957 / - |
| NCBI Gene ID | LOC131020039 |
|---|---|
| GeneID | 131020039 |
| locus_tag | - |
| NCBI Name | LOC131020039 |
| 原始查询 | SmilChr04G001607 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | eukaryotic translation initiation factor 2 subunit alpha homolog |
| 产物 | eukaryotic translation initiation factor 2 subunit alpha homolog |
| Arabidopsis | AT2G40290 (AT2G40290)Eukaryotic translation initiation factor 2 subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:818621] identity=78.3; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0296400- identity=77.2; qcov=0.968; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0003743 (translation initiation factor activity); GO:0005850 (eukaryotic translation initiation factor 2 complex); GO:0005851 (eukaryotic translation initiation factor 2B complex); GO:0033290 (eukaryotic 48S preinitiation complex); GO:0043022 (ribosome binding); GO:0043614 (multi-eIF complex) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00575 (S1); PF07541 (EIF_2_alpha) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020039 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804653.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057804653.1 |
| 3 | Cytosol | 细胞质基质 | 1.00000 | XP_057804653.1 |
| 4 | Nucleoplasm | 核质 | 0.60000 | XP_057804653.1 |
| 5 | Nucleolus | 核仁 | 0.40000 | XP_057804653.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:26766695 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B119,B41,B63,C53 |
Chr4:26767872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B136,B40,B75,C58 |
Chr4:26767890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B12,B36,C33,C57,C71 |
Chr4:26768245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr4:26768247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,A8,B58,B66 |
Chr4:26769430 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr4:26769479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B115,B49,B70,C85 |
Chr4:26769554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,A8,B58,B66 |
Chr4:26769557 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B25,B70 |
Chr4:26769560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B25,B70 |
Chr4:26769602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B135,B62 |
Chr4:26769642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804653.1PF00575
S1 18-92 aa
PF07541
EIF_2_alpha 130-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804653.1 |
Pfam | PF00575 |
S1 | Domain | 18 | 92 | 7.3e-12 | 46.2 | S1 RNA binding domain |
XP_057804653.1 |
Pfam | PF07541 |
EIF_2_alpha | Family | 130 | 260 | 4.2e-33 | 114.5 | Eukaryotic translation initiation factor 2 alpha subunit |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。