当前解析结果
SmilChr04G001612| 统一新 Gene ID | SmilChr04G001612 |
|---|---|
| 名称 | SmilChr04G001612 |
| 描述 | probable apyrase 7 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 26803549 - 26808583 / + |
| NCBI Gene ID | LOC131020041 |
|---|---|
| GeneID | 131020041 |
| locus_tag | - |
| NCBI Name | LOC131020041 |
| 原始查询 | SmilChr04G001612 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable apyrase 7 |
| 产物 | probable apyrase 7 |
| Arabidopsis | AT4G19180 (AT4G19180)GDA1/CD39 nucleoside phosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827656] identity=59.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os10g0350500- identity=55.5; qcov=0.942; evalue=0; confidence=high |
| GO | GO:0009134 (nucleoside diphosphate catabolic process); GO:0016020 (membrane); GO:0017110 (nucleoside diphosphate phosphatase activity) |
| KEGG | - |
| Pfam | PF01150 (GDA1_CD39) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020041 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057804656.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.80000 | XP_057804656.1 |
| 3 | Endosome membrane | 内体膜 | 0.20000 | XP_057804657.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057804656.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804656.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:26805650 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr4:26805849 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,B49,C71 |
Chr4:26805883 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,D10,D11 |
Chr4:26805885 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,B91 |
Chr4:26805960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C59,C84 |
Chr4:26806035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,C37,C58 |
Chr4:26806119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C57 |
Chr4:26806185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr4:26806191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,C13 |
Chr4:26806687 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr4:26806890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,C57 |
Chr4:26806901 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B135,B62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804656.1PF01150
GDA1_CD39 146-576 aa
XP_057804657.1PF01150
GDA1_CD39 146-576 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804656.1 |
Pfam | PF01150 |
GDA1_CD39 | Family | 146 | 576 | 4.1e-53 | 181.3 | GDA1/CD39 (nucleoside phosphatase) family |
XP_057804657.1 |
Pfam | PF01150 |
GDA1_CD39 | Family | 146 | 576 | 3.6e-53 | 181.5 | GDA1/CD39 (nucleoside phosphatase) family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。