Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001614`

染色体: Chr04 坐标: 26862887-26886900 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001614`
名称	SmilChr04G001614
描述	structural maintenance of chromosomes protein 6B-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	26862887 - 26886900 / `-`

ID 对照

NCBI Gene ID	`LOC131020045`
GeneID	`131020045`
locus_tag	`-`
NCBI Name	`LOC131020045`
原始查询	`SmilChr04G001614`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	structural maintenance of chromosomes protein 6B-like
产物	structural maintenance of chromosomes protein 6B-like
Arabidopsis	`AT5G61460` (MIM) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836267] identity=57.9; qcov=0.987; evalue=0; confidence=high
Rice	`Os09g0121050` - identity=43.3; qcov=0.517; evalue=5.18e-140; confidence=medium
GO	GO:0000724 (double-strand break repair via homologous recombination); GO:0003684 (damaged DNA binding); GO:0003697 (single-stranded DNA binding); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005694 (chromosome); GO:0030915 (Smc5-Smc6 complex); GO:0035861 (site of double-strand break); GO:0051276 (chromosome organization)
KEGG	-
Pfam	PF02463 (SMC_N); PF13175 (AAA_15); PF13476 (AAA_23)
InterPro	-
eggNOG	-
NR	GeneID:131020045

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804659.1`
2	Chromosome	染色体	1.00000	`XP_057804659.1`
3	Nucleoplasm	核质	0.80000	`XP_057804660.1`
4	Centromere	着丝粒	0.60000	`XP_057804659.1`
5	Telomere	端粒	0.60000	`XP_057804659.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:26869439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,C37,C58
`Chr4:26869675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B82,B99,C48,D7
`Chr4:26869806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:26869836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,C85
`Chr4:26870188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A25,C19,C54,D8
`Chr4:26870292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,B128
`Chr4:26870637`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr4:26870657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B135,B62
`Chr4:26870987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B91,C59,C84
`Chr4:26871225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,C57
`Chr4:26871746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B54,B84
`Chr4:26872613`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B135,B62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804659.1

1059 aa

530

1059

AAA_15

SMC_N

AAA_23

PF13175 AAA_15 23-296 aa PF02463 SMC_N 23-1049 aa PF13476 AAA_23 25-252 aa

XP_057804660.1

1019 aa

510

1019

SMC_N

PF02463 SMC_N 14-1009 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804659.1`	Pfam	`PF13175`	AAA_15	Domain	23	296	2.1e-08	34.8	AAA ATPase domain
`XP_057804659.1`	Pfam	`PF02463`	SMC_N	Domain	23	1049	7.2e-24	85.2	RecF/RecN/SMC N terminal domain
`XP_057804659.1`	Pfam	`PF13476`	AAA_23	Domain	25	252	7e-20	73.3	AAA domain
`XP_057804660.1`	Pfam	`PF02463`	SMC_N	Domain	14	1009	5.1e-15	56.2	RecF/RecN/SMC N terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948676.1
AAAAAGTGAAGAGGCACGAGGTTAAAAATCTGAAATTGAAGCAGTTTCTTGTTCTCGTGATTCCCCGCGCAAAAGTCATCCTCTCCCACTCCCGCCGCAGAGATGCAGCCCTCTTCTCTCTTCCCCGACGACCCCACTCGCCGCCCCAAACGCCTACAAGCCGGTATAATCTCCAGAATCAGTCTCCTGAACTTCATGTGCCACAGCAATCTCGAAATCGAGTTCGGAGACTTGGTTAACTTCATCACCGGTCAAAATGG...

XM_057948677.1
TCATCACCGGTCAAAATGGGAGTACGCTCCGCTCTCTCTCTGTCTGTGTGTGTGTGTGGAAAGAGCGCAATATTAACGGCACTTTGTGTAGCATTTGGGTGCCGAGCTCGTGGTACGCAGAGAGCGAATACTCTGAAGGATTTTATAAAGTCTGGCTGCAGCTATGCACTTGTTCAAGTTGAGATAAAAAATCAAGGTGAAGATGCTTTTAAGCATGAACTGTATGGAGACATCATCATTGTGGAGCGTAGAATTACAGA...

CDS

2 records

下载 CDS FASTA

LOC131020045
ATGCAGCCCTCTTCTCTCTTCCCCGACGACCCCACTCGCCGCCCCAAACGCCTACAAGCCGGTATAATCTCCAGAATCAGTCTCCTGAACTTCATGTGCCACAGCAATCTCGAAATCGAGTTCGGAGACTTGGTTAACTTCATCACCGGTCAAAATGGGAGTGGAAAGAGCGCAATATTAACGGCACTTTGTGTAGCATTTGGGTGCCGAGCTCGTGGTACGCAGAGAGCGAATACTCTGAAGGATTTTATAAAGTCTGG...

LOC131020045
ATGGGAGTACGCTCCGCTCTCTCTCTGTCTGTGTGTGTGTGTGGAAAGAGCGCAATATTAACGGCACTTTGTGTAGCATTTGGGTGCCGAGCTCGTGGTACGCAGAGAGCGAATACTCTGAAGGATTTTATAAAGTCTGGCTGCAGCTATGCACTTGTTCAAGTTGAGATAAAAAATCAAGGTGAAGATGCTTTTAAGCATGAACTGTATGGAGACATCATCATTGTGGAGCGTAGAATTACAGAATCTGCTGGTGGCAA...

Protein

2 records

下载 Protein FASTA

XP_057804659.1
MQPSSLFPDDPTRRPKRLQAGIISRISLLNFMCHSNLEIEFGDLVNFITGQNGSGKSAILTALCVAFGCRARGTQRANTLKDFIKSGCSYALVQVEIKNQGEDAFKHELYGDIIIVERRITESAGGNIALKNSQGRKIGSKREDLREIVEYFNIDVENPCTIMSQDKSREFLHSGNGKDKFKFFFKATLLQQVDDLLQGISKQLHDANGLVSHLEDSLRPAKKELDELQDKIKNMEAMEKISQQVQSLREKLAWSWVYDA...

XP_057804660.1
MGVRSALSLSVCVCGKSAILTALCVAFGCRARGTQRANTLKDFIKSGCSYALVQVEIKNQGEDAFKHELYGDIIIVERRITESAGGNIALKNSQGRKIGSKREDLREIVEYFNIDVENPCTIMSQDKSREFLHSGNGKDKFKFFFKATLLQQVDDLLQGISKQLHDANGLVSHLEDSLRPAKKELDELQDKIKNMEAMEKISQQVQSLREKLAWSWVYDADRKLDAQHKLIEKLKGRIPSCQAKIDQKHHMMEELNDRLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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