Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001633`

染色体: Chr04 坐标: 27088397-27093285 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001633`
名称	SmilChr04G001633
描述	amino acid transporter AVT6C-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27088397 - 27093285 / `-`

ID 对照

NCBI Gene ID	`LOC131020062`
GeneID	`131020062`
locus_tag	`-`
NCBI Name	`LOC131020062`
原始查询	`SmilChr04G001633`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amino acid transporter AVT6C-like
产物	amino acid transporter AVT6C-like
Arabidopsis	`AT3G56200` (AT3G56200) Transmembrane amino acid transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:824786] identity=55; qcov=0.912; evalue=1.81e-165; confidence=high
Rice	`Os01g0825800` (OsATL7) - identity=51.9; qcov=0.942; evalue=2.38e-156; confidence=high
GO	GO:0003333 (amino acid transmembrane transport); GO:0015171 (amino acid transmembrane transporter activity)
KEGG	-
Pfam	PF01490 (Aa_trans); PF03222 (Trp_Tyr_perm)
InterPro	-
eggNOG	-
NR	GeneID:131020062

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057804686.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057804686.1`
3	Nucleus	细胞核	0.00000	`XP_057804686.1`
4	Chromosome	染色体	0.00000	`XP_057804686.1`
5	Centromere	着丝粒	0.00000	`XP_057804686.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27088636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,A8,B54,D10
`Chr4:27088637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr4:27088647`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B51,C46
`Chr4:27088649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,A8,B54,D10
`Chr4:27088680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B123,B14,B44
`Chr4:27088721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:27089975`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B31
`Chr4:27090015`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr4:27090294`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B57,B88,C27,C55
`Chr4:27090963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:27090986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B90,C87
`Chr4:27091026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,C83,C85,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804686.1

468 aa

234

468

Aa_trans

Trp_Tyr_perm

PF01490 Aa_trans 55-456 aa PF03222 Trp_Tyr_perm 56-302 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804686.1`	Pfam	`PF01490`	Aa_trans	Domain	55	456	1e-48	166.7	Transmembrane amino acid transporter protein
`XP_057804686.1`	Pfam	`PF03222`	Trp_Tyr_perm	Family	56	302	1.9e-06	28.0	Tryptophan/tyrosine permease family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948703.1
TTTTTTTCGTTTTCTATGTTATCCAAATCCCTACGCATCGATCCTTTCATTCGCATCATTCATTCATCATAATACAGCTCCAAGTATCCAACCAACCATGATTTTCCAATTTTCTATATTTAGCCACCATGTGGTTTCTGCAAACAATAATTACATTCATATTTTCAAATATTCTATCCGCCCCATATATATAAATTTGTTTTCATTTTTCGGATGTCTCATTTATATAGGCTTATTTCTATAAAAAATATTTTTTTTTA...

CDS

1 records

下载 CDS FASTA

LOC131020062
ATGGACATATTAGAAATTTTATTTATATATTTTCATTTCCCACTGCTAGAATATTCTCTTTTTTTTCACTCGACGATGAAGCTCGAAAACCAGGAAATCGGAGTTCAAGCTCCGCTGCTCCCGGAAGTCGAGCCAATCAACGGTGAGAGATCGAACGCCGGCGCGTCGATCTCCGGCGCAATCTTCAACATCTCGACCGGGATGGTGGGAGCCGGAATCATGTCGATTCCGGCCACGTTTAAGGTGCTAGGTGTGATTCC...

Protein

1 records

下载 Protein FASTA

XP_057804686.1
MDILEILFIYFHFPLLEYSLFFHSTMKLENQEIGVQAPLLPEVEPINGERSNAGASISGAIFNISTGMVGAGIMSIPATFKVLGVIPSFVVILAISYLVEVTVEFLLKYTQSGQCNTYGELMAESFGKTGAVALQVCVVITNLGALIIYLIIIGDVLSGNESDGTVHLGVLQEWFGIHWWNSRAFSLLLVVLFVLLPLLLLRRIDSLRHASAISVLLAAFFVAICSVMAIHALWVGETKTPRLFPDFSGGVSALTLFTTV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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