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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001638

染色体: Chr04 坐标: 27212331-27224502 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001638
名称SmilChr04G001638
描述uncharacterized SmilChr04G001638
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向27212331 - 27224502 / -

ID 对照

NCBI Gene IDLOC131020066
GeneID131020066
locus_tag-
NCBI NameLOC131020066
原始查询SmilChr04G001638

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述hit=Os05g0359000; species=rice; confidence=weak
产物hit=Os05g0359000; species=rice; confidence=weak
ArabidopsisAT1G40087 (AT1G40087)
Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721]
identity=22.8; qcov=0.239; evalue=1.6e-09; confidence=weak
RiceOs05g0359000
-
identity=27.1; qcov=0.275; evalue=8.12e-23; confidence=weak
GOGO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG-
PfamPF02902 (Peptidase_C48)
InterPro-
eggNOG-
NRGeneID:131020066

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057804693.1
2 Chromosome 染色体 0.20000 XP_057804693.1
3 Centromere 着丝粒 0.00000 XP_057804693.1
4 Chromatin 染色质 0.00000 XP_057804693.1
5 Telomere 端粒 0.00000 XP_057804693.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:27214689 G A EMS_canonical_SNV CDS_variant 1 B75
Chr4:27214704 G A EMS_canonical_SNV CDS_variant 2 B98,C80
Chr4:27214756 C T EMS_canonical_SNV CDS_variant 2 C59,C84
Chr4:27214982 C T EMS_canonical_SNV CDS_variant 1 A1
Chr4:27215013 G A EMS_canonical_SNV CDS_variant 4 B125,B90,B92,C87
Chr4:27215017 C T EMS_canonical_SNV CDS_variant 1 C60
Chr4:27215503 C T EMS_canonical_SNV CDS_variant 5 A2,A8,B54,D10,D11
Chr4:27215536 G GTC 2bp_insertion frameshift_variant 41 A10,A20,A25,A9,B1,B103,B111,B115,B12,B130,B16,B22,B4,B48,B55,B60,B68,B71,B74,B77,B78,B81,B82,B98,C10,C19,C20,C32,C35,C48,C5,C54,C57,C6,C61,C67,C68,C72,C73,C86,D8
Chr4:27215540 GCC G 2bp_deletion frameshift_variant 41 A10,A20,A25,A9,B1,B103,B111,B115,B12,B130,B16,B22,B4,B48,B55,B60,B68,B71,B74,B77,B78,B81,B82,B98,C10,C19,C20,C32,C35,C48,C5,C54,C57,C6,C61,C67,C68,C72,C73,C86,D8
Chr4:27216626 G A EMS_canonical_SNV CDS_variant 3 B12,C57,D7
Chr4:27216819 G A EMS_canonical_SNV CDS_variant 1 B75
Chr4:27216941 C T EMS_canonical_SNV CDS_variant 3 B134,B65,B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804693.1
1167 aa
N
1
584
1167
Peptidase_C48
C
PF02902 Peptidase_C48 996-1160 aa
XP_057804694.1
1167 aa
N
1
584
1167
Peptidase_C48
C
PF02902 Peptidase_C48 996-1160 aa
XP_057804695.1
1167 aa
N
1
584
1167
Peptidase_C48
C
PF02902 Peptidase_C48 996-1160 aa
XP_057804696.1
1164 aa
N
1
582
1164
Peptidase_C48
C
PF02902 Peptidase_C48 993-1157 aa
XP_057804697.1
1162 aa
N
1
581
1162
Peptidase_C48
C
PF02902 Peptidase_C48 991-1155 aa
XP_057804699.1
1162 aa
N
1
581
1162
Peptidase_C48
C
PF02902 Peptidase_C48 991-1155 aa
XP_057804700.1
1159 aa
N
1
580
1159
Peptidase_C48
C
PF02902 Peptidase_C48 988-1152 aa
XP_057804701.1
1159 aa
N
1
580
1159
Peptidase_C48
C
PF02902 Peptidase_C48 988-1152 aa
XP_057804702.1
1152 aa
N
1
576
1152
Peptidase_C48
C
PF02902 Peptidase_C48 981-1145 aa
XP_057804703.1
1147 aa
N
1
574
1147
Peptidase_C48
C
PF02902 Peptidase_C48 976-1140 aa
XP_057804704.1
1121 aa
N
1
560
1121
Peptidase_C48
C
PF02902 Peptidase_C48 950-1114 aa
XP_057804705.1
1121 aa
N
1
560
1121
Peptidase_C48
C
PF02902 Peptidase_C48 950-1114 aa
XP_057804706.1
1116 aa
N
1
558
1116
Peptidase_C48
C
PF02902 Peptidase_C48 945-1109 aa
XP_057804707.1
1116 aa
N
1
558
1116
Peptidase_C48
C
PF02902 Peptidase_C48 945-1109 aa
XP_057804708.1
1101 aa
N
1
550
1101
Peptidase_C48
C
PF02902 Peptidase_C48 930-1094 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804693.1 Pfam PF02902 Peptidase_C48 Domain 996 1160 1.4e-11 45.4 Ulp1 protease family, C-terminal catalytic domain
XP_057804694.1 Pfam PF02902 Peptidase_C48 Domain 996 1160 1.4e-11 45.4 Ulp1 protease family, C-terminal catalytic domain
XP_057804695.1 Pfam PF02902 Peptidase_C48 Domain 996 1160 1.4e-11 45.4 Ulp1 protease family, C-terminal catalytic domain
XP_057804696.1 Pfam PF02902 Peptidase_C48 Domain 993 1157 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain
XP_057804697.1 Pfam PF02902 Peptidase_C48 Domain 991 1155 1.4e-11 45.4 Ulp1 protease family, C-terminal catalytic domain
XP_057804699.1 Pfam PF02902 Peptidase_C48 Domain 991 1155 1.4e-11 45.4 Ulp1 protease family, C-terminal catalytic domain
XP_057804700.1 Pfam PF02902 Peptidase_C48 Domain 988 1152 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain
XP_057804701.1 Pfam PF02902 Peptidase_C48 Domain 988 1152 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain
XP_057804702.1 Pfam PF02902 Peptidase_C48 Domain 981 1145 1.4e-11 45.4 Ulp1 protease family, C-terminal catalytic domain
XP_057804703.1 Pfam PF02902 Peptidase_C48 Domain 976 1140 1.4e-11 45.4 Ulp1 protease family, C-terminal catalytic domain
XP_057804704.1 Pfam PF02902 Peptidase_C48 Domain 950 1114 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain
XP_057804705.1 Pfam PF02902 Peptidase_C48 Domain 950 1114 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain
XP_057804706.1 Pfam PF02902 Peptidase_C48 Domain 945 1109 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain
XP_057804707.1 Pfam PF02902 Peptidase_C48 Domain 945 1109 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain
XP_057804708.1 Pfam PF02902 Peptidase_C48 Domain 930 1094 1.3e-11 45.5 Ulp1 protease family, C-terminal catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

15 records

下载 cDNA FASTA
XM_057948724.1
AGAGAGCCTCGACTTAAAGGACTTCGTTCCGCTTGAATTCGGATGTCTGAACTAAATACTTCGTCACCGTTCTCTCTCTCTGGGTTGCTCTTGAGGAGCCAATAAATCTAAAATCAGACAAACTTCGATGCTACCAATCAAGAAAAGAGTTCAACTGGAGAGATATTTTACTTTTTTTCTTTCTGAAATATGGTTGATTTGGATTAATTAAGCGGAGGAAGAAGCTCTAAGTAGCTGTCCAGAAGTTCACTAATTTCAAG...
XM_057948721.1
TCGACTTAAAGGACTTCGTTCCGCTTGAATTCGGATGTCTGAACTAAATACTTCGTCACCGTTCTCTCTCTCTGGGTTGCTCTTGAGGAGCCAATAAATCTAAAATCAGACAAACTTCGATGCTACCAATCAAGAAAAGAGTTCAACTGGAGAGATATTTTACTTTTTTTCTTTCTGAAATATGGTTGATTTGGATTAATTAAGCGGAGGAAGAAGCTCTAAGTAGCTGTCCAGAAGTTCACTAATTTCAAGTCGCGTTA...

CDS

15 records

下载 CDS FASTA
LOC131020066
ATGGCACCTAGAAAAAGGAAACCCGTAGCGAAAAGAAGATCAAATCGTGTATTACGAGATGGGGATGAAATGGAGGAACATGGACTACAACAAAATGAACAAGAACCAGACTTGGAAGTCAGTCAACAACCAATTCAAAAGCAAGCAATGGCTCCTAGTACTCGAACTCGAAGTGCAACTGCCAGTCGCAATGCCCGTTCTGTGATTCAAGAGAAGCTGCAAGCGATGGAGAATAGTCAACCACAAATCTTTGCACAAGC...
LOC131020066
ATGGCACCTAGAAAAAGGAAACCCGTAGCGAAAAGAAGATCAAATCGTGTATTACGAGATGGGGATGAAATGGAGGAACATGGACTACAACAAAATGAACAAGAACCAGACTTGGAAGTCAGTCAACAACCAATTCAAAAGCAAGCAATGGCTCCTAGTACTCGAACTCGAAGTGCAACTGCCAGTCGCAATGCCCGTTCTGTGATTCAAGAGAAGCTGCAAGCGATGGAGAATAGTCAACCACAAATCTTTGCACAAGC...

Protein

15 records

下载 Protein FASTA
XP_057804693.1
MAPRKRKPVAKRRSNRVLRDGDEMEEHGLQQNEQEPDLEVSQQPIQKQAMAPSTRTRSATASRNARSVIQEKLQAMENSQPQIFAQASMGKVMGSRTRKASGNQSGYCGLEGMDQMEGDGQLQSEEELEFQMNRQINGRQVTAPRSQRSTVNKRLNHGYLEQDEMEEHELQEDERYTNLEVTDALRNALQILMASGSRRPTTNQTSDSGFQDNHQRQENGQWKNRRKMRPPISQQASIMTHTTRKATGNHLGYHILRDEI...
XP_057804694.1
MAPRKRKPVAKRRSNRVLRDGDEMEEHGLQQNEQEPDLEVSQQPIQKQAMAPSTRTRSATASRNARSVIQEKLQAMENSQPQIFAQASMGKVMGSRTRKASGNQSGYCGLEGMDQMEGDGQLQSEEELEFQMNRQINGRQVTAPRSQRSTVNKRLNHGYLEQDEMEEHELQEDERYTNLEVTDALRNALQILMASGSRRPTTNQTSDSGFQDNHQRQENGQWKNRRKMRPPISQQASIMTHTTRKATGNHLGYHILRDEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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