当前解析结果
SmilChr04G001642| 统一新 Gene ID | SmilChr04G001642 |
|---|---|
| 名称 | SmilChr04G001642 |
| 描述 | uncharacterized SmilChr04G001642 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 27341801 - 27348089 / - |
| NCBI Gene ID | LOC131020072 |
|---|---|
| GeneID | 131020072 |
| locus_tag | - |
| NCBI Name | LOC131020072 |
| 原始查询 | SmilChr04G001642 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:841554]; symbol=AT1G51310; hit=AT1G51310; species=arabidopsis; confidence=high |
| 产物 | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:841554]; symbol=AT1G51310; hit=AT1G51310; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G51310 (AT1G51310)tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:841554] identity=77.8; qcov=0.807; evalue=0; confidence=high |
| Rice | Os03g0174600- identity=65.3; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0008033 (tRNA processing); GO:0016783 (sulfurtransferase activity) |
| KEGG | - |
| Pfam | PF00733 (Asn_synthase); PF03054 (tRNA_Me_trans); PF20258 (tRNA_Me_trans_C); PF20259 (tRNA_Me_trans_M) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020072 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057804710.1 |
| 2 | Chloroplast | 叶绿体 | 1.00000 | XP_057804710.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804710.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804710.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804710.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:27341995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,A8,B54,D10 |
Chr4:27342246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C59,C84 |
Chr4:27342847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr4:27343096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr4:27343136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:27343505 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C44 |
Chr4:27343505 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C44 |
Chr4:27343984 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,C39,C75 |
Chr4:27344044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,C58,C78 |
Chr4:27345365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr4:27347425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B52,C39,C75 |
Chr4:27347545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804710.1PF00733
Asn_synthase 88-211 aa
PF03054
tRNA_Me_trans 88-291 aa
PF20259
tRNA_Me_trans_M 296-358 aa
PF20258
tRNA_Me_trans_C 368-447 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804710.1 |
Pfam | PF00733 |
Asn_synthase | Domain | 88 | 211 | 0.0001 | 22.8 | Asparagine synthase |
XP_057804710.1 |
Pfam | PF03054 |
tRNA_Me_trans | Domain | 88 | 291 | 3.3e-75 | 252.9 | tRNA methyl transferase HUP domain |
XP_057804710.1 |
Pfam | PF20259 |
tRNA_Me_trans_M | Domain | 296 | 358 | 2.1e-25 | 88.7 | tRNA methyl transferase PRC-barrel domain |
XP_057804710.1 |
Pfam | PF20258 |
tRNA_Me_trans_C | Domain | 368 | 447 | 4.5e-16 | 59.7 | Aminomethyltransferase beta-barrel domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。