Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001643`

染色体: Chr04 坐标: 27352014-27353088 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001643`
名称	SmilChr04G001643
描述	uncharacterized SmilChr04G001643
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27352014 - 27353088 / `+`

ID 对照

NCBI Gene ID	`LOC131023222`
GeneID	`131023222`
locus_tag	`-`
NCBI Name	`LOC131023222`
原始查询	`SmilChr04G001643`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=low
产物	MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669]; symbol=MUG3; hit=AT1G06740; species=arabidopsis; confidence=low
Arabidopsis	`AT1G06740` (MUG3) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=30.2; qcov=0.985; evalue=3.52e-41; confidence=low
Rice	`Os01g0595300` - identity=29; qcov=0.91; evalue=5.29e-39; confidence=low
GO	-
KEGG	-
Pfam	PF00872 (Transposase_mut); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131023222

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057808747.1`
2	Chromosome	染色体	0.00000	`XP_057808747.1`
3	Centromere	着丝粒	0.00000	`XP_057808747.1`
4	Chromatin	染色质	0.00000	`XP_057808747.1`
5	Telomere	端粒	0.00000	`XP_057808747.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27352038`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B81,B82,C58,C76,D8
`Chr4:27352136`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A4
`Chr4:27352136`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr4:27352308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:27352395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr4:27352488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:27352648`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr4:27352684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B22,B80
`Chr4:27352873`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B78,C61
`Chr4:27352900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr4:27352925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:27352930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C53,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057808747.1

333 aa

166

333

MULE

Transposase_mut

PF10551 MULE 175-269 aa PF00872 Transposase_mut 192-312 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057808747.1`	Pfam	`PF10551`	MULE	Domain	175	269	3.1e-19	69.9	MULE transposase domain
`XP_057808747.1`	Pfam	`PF00872`	Transposase_mut	Family	192	312	7e-11	42.3	Transposase, Mutator family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057952764.1
ATGAAGCAGGGCAAGGAATTTTCTGTCAGCAAATCAGACAGCAGACGAGTCTACTTCAAATGCAAGCATTCAGATACGTGCCCCTTCAAGCTCCATGCATCGTCACAAGATGGAGCCATTTGGGGAGTGTATAAGTTCACCAATGAGCACTCATGCGACAGTGAGCTAGGGCGCGTAGCGCGAATAAAAGCCCCTGCAAAAGTCGTCGCAGCATATCTAGCACAGAAAATACACGACGATTGCGAGATCTTGAAGCCGAA...

CDS

1 records

下载 CDS FASTA

LOC131023222
ATGAAGCAGGGCAAGGAATTTTCTGTCAGCAAATCAGACAGCAGACGAGTCTACTTCAAATGCAAGCATTCAGATACGTGCCCCTTCAAGCTCCATGCATCGTCACAAGATGGAGCCATTTGGGGAGTGTATAAGTTCACCAATGAGCACTCATGCGACAGTGAGCTAGGGCGCGTAGCGCGAATAAAAGCCCCTGCAAAAGTCGTCGCAGCATATCTAGCACAGAAAATACACGACGATTGCGAGATCTTGAAGCCGAA...

Protein

1 records

下载 Protein FASTA

XP_057808747.1
MKQGKEFSVSKSDSRRVYFKCKHSDTCPFKLHASSQDGAIWGVYKFTNEHSCDSELGRVARIKAPAKVVAAYLAQKIHDDCEILKPKAIQLELRRKFGVQIKYDVALRARNRATEMVYGRHDQSFEMLPKYLYMLRQSNPGPMVEWEVDDDGRFKHLFVALAASATPFMFILRPVIVVDGTHLKGKNRGILFVAVTKDGNESLFPLAYGVGPKENDESWTYFMSRIRRVYGQADPLLIVSDQHISIANAIRNELPNAIHG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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