Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001649`

染色体: Chr04 坐标: 27431858-27434802 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001649`
名称	SmilChr04G001649
描述	probable leucine-rich repeat receptor-like protein kinase IMK3
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27431858 - 27434802 / `-`

ID 对照

NCBI Gene ID	`LOC131020078`
GeneID	`131020078`
locus_tag	`-`
NCBI Name	`LOC131020078`
原始查询	`SmilChr04G001649`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable leucine-rich repeat receptor-like protein kinase IMK3
产物	probable leucine-rich repeat receptor-like protein kinase IMK3
Arabidopsis	`AT3G51740` (IMK2) inflorescence meristem receptor-like kinase 2 [Source:NCBI gene (formerly Entrezgene);Acc:824337] identity=58.6; qcov=1.03; evalue=0; confidence=high
Rice	`Os12g0107700` - identity=59.3; qcov=0.924; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131020078

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057804718.1`
2	Nucleus	细胞核	0.00000	`XP_057804718.1`
3	Chromosome	染色体	0.00000	`XP_057804718.1`
4	Centromere	着丝粒	0.00000	`XP_057804718.1`
5	Chromatin	染色质	0.00000	`XP_057804718.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27432271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B8,C83
`Chr4:27432526`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B128,B35,B53
`Chr4:27432827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C30,C49
`Chr4:27433160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C30,C49
`Chr4:27433222`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,C38,D7
`Chr4:27433242`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr4:27433376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:27433439`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B65,B77,C14,C4
`Chr4:27433446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:27433481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,C75
`Chr4:27433865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:27433997`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804718.1

750 aa

375

750

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 46-86 aa PF00560 LRR_1 138-158 aa PF00560 LRR_1 163-182 aa PF00560 LRR_1 234-256 aa PF13855 LRR_8 234-292 aa PF00560 LRR_1 258-279 aa PF00560 LRR_1 282-302 aa PF00069 Pkinase 459-725 aa PF07714 PK_Tyr_Ser-Thr 459-726 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804718.1`	Pfam	`PF08263`	LRRNT_2	Family	46	86	5.8e-10	40.0	Leucine rich repeat N-terminal domain
`XP_057804718.1`	Pfam	`PF00560`	LRR_1	Repeat	138	158	6.3e-20	67.7	Leucine Rich Repeat
`XP_057804718.1`	Pfam	`PF00560`	LRR_1	Repeat	163	182	6.3e-20	67.7	Leucine Rich Repeat
`XP_057804718.1`	Pfam	`PF00560`	LRR_1	Repeat	234	256	6.3e-20	67.7	Leucine Rich Repeat
`XP_057804718.1`	Pfam	`PF13855`	LRR_8	Repeat	234	292	9.7e-18	64.4	Leucine rich repeat
`XP_057804718.1`	Pfam	`PF00560`	LRR_1	Repeat	258	279	6.3e-20	67.7	Leucine Rich Repeat
`XP_057804718.1`	Pfam	`PF00560`	LRR_1	Repeat	282	302	6.3e-20	67.7	Leucine Rich Repeat
`XP_057804718.1`	Pfam	`PF00069`	Pkinase	Domain	459	725	1e-37	130.7	Protein kinase domain
`XP_057804718.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	459	726	3.8e-39	135.3	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948735.1
TGTGTGCTACAAAATTACATGCAAGTAAATTCAGGAATACTAGCCGTTACAACATTGGGGCGGAAGCGAAGTAGAGAGAGAGAGCTTCCACCGAATCTCTGTGACATAACTCCTGACACTTCCTCATCTCTTCCCAGAATAACCCATTTTAGATTCCTTTTATACAACAATAACAATAACACACACTCTCTCTCTCTCTCTCTCTCTCACGTGTGTGTCGTCACTCACAAATTCACAATAACACTCTCTCTCTCTCTTCC...

CDS

1 records

下载 CDS FASTA

LOC131020078
ATGGAGCCATTACCATTTGAAGAAAACAAAAGAAAGAAAGAGAAATGGAAACAACTATTGTTGTTGATTTCCCTCATGTTATCCTGCGCAGAGGCAGTCTCAAGCGACTCCTCCTGGGACGGCGTGATCGTGACGCAAGAAGACTTCCAAGCCCTCCAAGCATTCAAACACGACCTCGTCGATCCCAACGGCTTCTTAAAAAGCTGGAACGACACCGGCTACGGCGCCTGCTCCGGCGGCTGGGCCGGCATCAAATGCGC...

Protein

1 records

下载 Protein FASTA

XP_057804718.1
MEPLPFEENKRKKEKWKQLLLLISLMLSCAEAVSSDSSWDGVIVTQEDFQALQAFKHDLVDPNGFLKSWNDTGYGACSGGWAGIKCAQGQVIVIQLPWRGLGGRITERIGQFQALRKLSLHDNLIAGQIPTSLHFLPNLRGLQLFNNRLSGSIPASLGLCPLLQTIDLANNSLSGPLPPTLVNSTKLFRLNVSYNLLSGSIPLTFTHTSSLMFLALGNNNLSGPIPDSWSHAYQLQSLTLDHNLLTGSLPNTLFGLKNLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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