Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001683`

染色体: Chr04 坐标: 27861115-27863257 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001683`
名称	SmilChr04G001683
描述	putative pentatricopeptide repeat-containing protein At3g15130
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	27861115 - 27863257 / `-`

ID 对照

NCBI Gene ID	`LOC131019555`
GeneID	`131019555`
locus_tag	`-`
NCBI Name	`LOC131019555`
原始查询	`SmilChr04G001683`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At3g15130
产物	putative pentatricopeptide repeat-containing protein At3g15130
Arabidopsis	`AT2G13600` (SLO2) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815845] identity=32.8; qcov=1.11; evalue=1.05e-118; confidence=low
Rice	`Os04g0676200` - identity=48.1; qcov=0.701; evalue=1.52e-128; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131019555

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057804114.1`
2	Nucleus	细胞核	0.00000	`XP_057804114.1`
3	Chromosome	染色体	0.00000	`XP_057804114.1`
4	Centromere	着丝粒	0.00000	`XP_057804114.1`
5	Chromatin	染色质	0.00000	`XP_057804114.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:27861527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A13
`Chr4:27861676`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	B3
`Chr4:27861676`	`CCT`	`C`	2bp_deletion	CDS_variant	1	B3
`Chr4:27861773`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr4:27861803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:27862114`	`TC`	`T`	1bp_deletion	frameshift_variant	1	D11
`Chr4:27862114`	`TC`	`T`	1bp_deletion	CDS_variant	1	D11
`Chr4:27862127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B117,B31
`Chr4:27862139`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B90,B92,C14,C87
`Chr4:27862570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr4:27863001`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804114.1

572 aa

286

572

PPR

PPR_2

PPR

PPR_1

PPR_2

PPR_3

PPR

E_motif

PF01535 PPR 53-83 aa PF13041 PPR_2 81-128 aa PF01535 PPR 84-113 aa PF01535 PPR 259-285 aa PF01535 PPR 287-317 aa PF01535 PPR 361-387 aa PF12854 PPR_1 387-415 aa PF13041 PPR_2 387-433 aa PF13812 PPR_3 387-433 aa PF01535 PPR 389-418 aa PF20431 E_motif 504-566 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804114.1`	Pfam	`PF01535`	PPR	Repeat	53	83	1.5e-53	176.1	PPR repeat
`XP_057804114.1`	Pfam	`PF13041`	PPR_2	Repeat	81	128	1.6e-63	211.4	PPR repeat family
`XP_057804114.1`	Pfam	`PF01535`	PPR	Repeat	84	113	1.5e-53	176.1	PPR repeat
`XP_057804114.1`	Pfam	`PF01535`	PPR	Repeat	259	285	1.5e-53	176.1	PPR repeat
`XP_057804114.1`	Pfam	`PF01535`	PPR	Repeat	287	317	1.5e-53	176.1	PPR repeat
`XP_057804114.1`	Pfam	`PF01535`	PPR	Repeat	361	387	1.5e-53	176.1	PPR repeat
`XP_057804114.1`	Pfam	`PF12854`	PPR_1	Repeat	387	415	1e-31	109.1	PPR repeat
`XP_057804114.1`	Pfam	`PF13041`	PPR_2	Repeat	387	433	1.6e-63	211.4	PPR repeat family
`XP_057804114.1`	Pfam	`PF13812`	PPR_3	Repeat	387	433	1.4e-28	99.5	Pentatricopeptide repeat domain
`XP_057804114.1`	Pfam	`PF01535`	PPR	Repeat	389	418	1.5e-53	176.1	PPR repeat
`XP_057804114.1`	Pfam	`PF20431`	E_motif	Repeat	504	566	9.8e-13	48.9	E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948131.1
TATTTGTCTCTTCTATTCTTCCCTAATGAGAAACAGGTCCAGCAAAAGAAACCCCGGACTGCATCTCAAGACTCTTCTCTTCTTCGAAATCCAGATTGGGGCAAAAAAAGCAAAATCTTTTACAAGCTTCATTGCTGTTGACATCGAAGCGATCACCGCCATTTCATCCTTATTTCTCTCTGCAATTCTCCATCACCACTTTGTATGTACAATCTCATGTTACTTCCTCAACTCAAAAAGTTCCACACATCAACAACCAC...

CDS

1 records

下载 CDS FASTA

LOC131019555
ATGTACAATCTCATGTTACTTCCTCAACTCAAAAAGTTCCACACATCAACAACCACTACCATTCTGCGCCACTGCGTCGAGACTTCCAACTTGCCAAAAGCCAAAGCAATACACGCAAAGCTCATCAAAACATCCCAACACGAATCAGATTCCTTATTCACCCACAACCATCTCATCAACGCCTACGTCAAATGTGGGGACACCGCGAGTGGCCTCCAACTGTTCGACGAAATGCCTGAGAGGAACGTTGTGTCGTGGAC...

Protein

1 records

下载 Protein FASTA

XP_057804114.1
MYNLMLLPQLKKFHTSTTTTILRHCVETSNLPKAKAIHAKLIKTSQHESDSLFTHNHLINAYVKCGDTASGLQLFDEMPERNVVSWTALIAGFVQKGFPAETLSLFSDMHRSSIRPNEFTFVSVLHACSFAQTFHLICAFQVFAMVIKFGFENNVYLVNALLTTLIRNAELDEAAKVFEECFNRDIVSWNAVFDGFLKFSCNCIPNFWRRMIFEGVKPDAFTFATVLTGLADLSNLETGLRVHALLIKSGHRSERCVGNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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