Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001705`

染色体: Chr04 坐标: 28185937-28189670 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001705`
名称	SmilChr04G001705
描述	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	28185937 - 28189670 / `+`

ID 对照

NCBI Gene ID	`LOC131019589`
GeneID	`131019589`
locus_tag	`-`
NCBI Name	`LOC131019589`
原始查询	`SmilChr04G001705`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial
产物	bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase%2C mitochondrial
Arabidopsis	`AT1G48420` (D-CDES) D-cysteine desulfhydrase [Source:NCBI gene (formerly Entrezgene);Acc:841263] identity=69; qcov=0.892; evalue=0; confidence=high
Rice	`Os02g0773300` (DCD1) putative D-cysteine desulfhydrase 1, mitochondrial [Source:NCBI gene (formerly Entrezgene);Acc:4330881] identity=76.4; qcov=0.842; evalue=0; confidence=high
GO	GO:0019148 (D-cysteine desulfhydrase activity)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00470 (D-Amino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00291 (PALP)
InterPro	-
eggNOG	-
NR	GeneID:131019589

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057804151.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057804151.1`
3	Mitochondrion	线粒体	0.20000	`XP_057804151.1`
4	Nucleus	细胞核	0.00000	`XP_057804151.1`
5	Chromosome	染色体	0.00000	`XP_057804151.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:28186180`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr4:28186219`	`GA`	`G`	1bp_deletion	frameshift_variant	1	A15
`Chr4:28186219`	`GA`	`G`	1bp_deletion	CDS_variant	1	A15
`Chr4:28186263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:28186375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr4:28186541`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C9,D10
`Chr4:28187626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:28187937`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B82,C14
`Chr4:28187941`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C24
`Chr4:28188141`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:28188682`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B54,B82,C14
`Chr4:28188820`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804151.1

437 aa

218

437

PALP

PF00291 PALP 91-399 aa

XP_057804152.1

437 aa

218

437

PALP

PF00291 PALP 91-399 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804151.1`	Pfam	`PF00291`	PALP	Family	91	399	4.6e-37	128.6	Pyridoxal-phosphate dependent enzyme
`XP_057804152.1`	Pfam	`PF00291`	PALP	Family	91	399	4.6e-37	128.6	Pyridoxal-phosphate dependent enzyme

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948168.1
AGCCGATTACGATTCAAAATTTTTTCGACAGTGAACCCCCGGTTCGGGCATCACTAAATAGAGAGCTGAGAGAATCCTGATAAAACTCACACTAACAGAAACGGCTCACACACTCGACATAGCAATGAATTAGTAATGATTGGAAGCAGCTACAAATAAGCTGACAACGAGAGTCAAAGTAGGAGATAAAATGATAAGCAGCCGACTCTTGAATTCAGCCCCGTTGTGTGTTCCGTCATCTATCATCTCCGTCAATAACA...

XM_057948169.1
AGCCGATTACGATTCAAAATTTTTTCGACAGTGAACCCCCGGTTCGGGCATCACTAAATAGAGAGCTGAGAGAATCCTGATAAAACTCACACTAACAGAAACGGCTCACACACTCGACATAGCAATGAATTAGTAATGATTGGAAGCAGCTACAAATAAGCTGACAACGAGAGTCAAAGTAGGAGATAAAATGATAAGCAGCCGACTCTTGAATTCAGCCCCGTTGTGTGTTCCGTCATCTATCATCTCCGTCAATAACA...

CDS

2 records

下载 CDS FASTA

LOC131019589
ATGATAAGCAGCCGACTCTTGAATTCAGCCCCGTTGTGTGTTCCGTCATCTATCATCTCCGTCAATAACAACAAATTCAGTTCAGTAAAAGGGAGCCGACATAGCCAAATCGCTCACTCCTCGTATTATCCGACGGCAACGATCAAATCCCAAGTTTCAATGGATTCTATCCCAAAAGCCCACGAGCCCGCTTTCGAATTTCTTTGCAAAAAGCCTTACACGCCGCCTTCGTGGGCAGCCAATCTCAACCCAGTTCCTTC...

Protein

2 records

下载 Protein FASTA

XP_057804151.1
MISSRLLNSAPLCVPSSIISVNNNKFSSVKGSRHSQIAHSSYYPTATIKSQVSMDSIPKAHEPAFEFLCKKPYTPPSWAANLNPVPSHIFSLGHFPTPIHQWNLPNLPKGTEVYLKRDDLSGMQLSGNKVRKLEFLLAEAVAQGADCIITIGGIQSNHCRATAVAAKYLNLDCYLILRTSKALVDKDPGLTGNLLVERLVGAHVDLISKEEYASVGAVALTNILKQKLLSEGRKPYVIPVGGSNSLGTWGYVEAVREIQQ...

XP_057804152.1
MISSRLLNSAPLCVPSSIISVNNNKFSSVKGSRHSQIAHSSYYPTATIKSQVSMDSIPKAHEPAFEFLCKKPYTPPSWAANLNPVPSHIFSLGHFPTPIHQWNLPNLPKGTEVYLKRDDLSGMQLSGNKVRKLEFLLAEAVAQGADCIITIGGIQSNHCRATAVAAKYLNLDCYLILRTSKALVDKDPGLTGNLLVERLVGAHVDLISKEEYASVGAVALTNILKQKLLSEGRKPYVIPVGGSNSLGTWGYVEAVREIQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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