当前解析结果
SmilChr04G001717| 统一新 Gene ID | SmilChr04G001717 |
|---|---|
| 名称 | SmilChr04G001717 |
| 描述 | protein STICHEL-like 2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 28417138 - 28421563 / + |
| NCBI Gene ID | LOC131019600 |
|---|---|
| GeneID | 131019600 |
| locus_tag | - |
| NCBI Name | LOC131019600 |
| 原始查询 | SmilChr04G001717 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein STICHEL-like 2 |
| 产物 | protein STICHEL-like 2 |
| Arabidopsis | AT4G24790 (AT4G24790)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:828581] identity=45; qcov=0.789; evalue=1.2e-175; confidence=medium |
| Rice | Os08g0120200- identity=45.4; qcov=0.55; evalue=3.17e-119; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0009360 (DNA polymerase III complex) |
| KEGG | - |
| Pfam | PF13177 (DNA_pol3_delta2); PF21960 (RCF1-5-like_lid); PF22608 (DNAX_ATPase_lid); PF23007 (DnaA_N-like_STI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019600 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804165.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057804165.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804165.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804165.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804165.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:28418138 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr4:28418175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B133,C17 |
Chr4:28418186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:28418219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:28418273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr4:28418761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,C14 |
Chr4:28418840 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr4:28418847 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B94 |
Chr4:28418847 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B94 |
Chr4:28418889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr4:28419161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr4:28419239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804165.1PF13177
DNA_pol3_delta2 310-467 aa
PF22608
DNAX_ATPase_lid 472-512 aa
PF21960
RCF1-5-like_lid 475-511 aa
PF23007
DnaA_N-like_STI 704-784 aa
XP_057804166.1PF13177
DNA_pol3_delta2 310-467 aa
PF22608
DNAX_ATPase_lid 472-512 aa
PF21960
RCF1-5-like_lid 475-511 aa
PF23007
DnaA_N-like_STI 704-783 aa
XP_057804167.1PF13177
DNA_pol3_delta2 310-467 aa
PF22608
DNAX_ATPase_lid 472-512 aa
PF21960
RCF1-5-like_lid 475-511 aa
PF23007
DnaA_N-like_STI 698-778 aa
XP_057804168.1PF13177
DNA_pol3_delta2 310-467 aa
PF22608
DNAX_ATPase_lid 472-512 aa
PF21960
RCF1-5-like_lid 475-511 aa
PF23007
DnaA_N-like_STI 698-777 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804165.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 310 | 467 | 1.3e-22 | 81.3 | DNA polymerase III, delta subunit |
XP_057804165.1 |
Pfam | PF22608 |
DNAX_ATPase_lid | Domain | 472 | 512 | 1.4e-08 | 35.1 | DNA polymerase III clamp loader subunit, ATPase lid domain |
XP_057804165.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 475 | 511 | 6.5e-07 | 29.9 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057804165.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 704 | 784 | 2.2e-20 | 73.3 | STICHEL, DnaA_N-like alpha-beta domain |
XP_057804166.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 310 | 467 | 1.2e-22 | 81.3 | DNA polymerase III, delta subunit |
XP_057804166.1 |
Pfam | PF22608 |
DNAX_ATPase_lid | Domain | 472 | 512 | 1.4e-08 | 35.1 | DNA polymerase III clamp loader subunit, ATPase lid domain |
XP_057804166.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 475 | 511 | 6.5e-07 | 29.9 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057804166.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 704 | 783 | 8.1e-22 | 77.9 | STICHEL, DnaA_N-like alpha-beta domain |
XP_057804167.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 310 | 467 | 1.2e-22 | 81.3 | DNA polymerase III, delta subunit |
XP_057804167.1 |
Pfam | PF22608 |
DNAX_ATPase_lid | Domain | 472 | 512 | 1.4e-08 | 35.1 | DNA polymerase III clamp loader subunit, ATPase lid domain |
XP_057804167.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 475 | 511 | 6.4e-07 | 30.0 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057804167.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 698 | 778 | 2.2e-20 | 73.3 | STICHEL, DnaA_N-like alpha-beta domain |
XP_057804168.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 310 | 467 | 1.2e-22 | 81.3 | DNA polymerase III, delta subunit |
XP_057804168.1 |
Pfam | PF22608 |
DNAX_ATPase_lid | Domain | 472 | 512 | 1.4e-08 | 35.1 | DNA polymerase III clamp loader subunit, ATPase lid domain |
XP_057804168.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 475 | 511 | 6.4e-07 | 30.0 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057804168.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 698 | 777 | 8.1e-22 | 77.9 | STICHEL, DnaA_N-like alpha-beta domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。