Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001718

染色体: Chr04 坐标: 28434296-28437786 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001718
名称SmilChr04G001718
描述uncharacterized SmilChr04G001718
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向28434296 - 28437786 / -

ID 对照

NCBI Gene IDLOC131019601
GeneID131019601
locus_tag-
NCBI NameLOC131019601
原始查询SmilChr04G001718

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述DHHA1 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:841770]; symbol=AT1G53345; hit=AT1G53345; species=arabidopsis; confidence=high
产物DHHA1 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:841770]; symbol=AT1G53345; hit=AT1G53345; species=arabidopsis; confidence=high
ArabidopsisAT1G53345 (AT1G53345)
DHHA1 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:841770]
identity=51.5; qcov=1.12; evalue=1.07e-111; confidence=high
RiceOs11g0167200
-
identity=29.7; qcov=1.12; evalue=1.23e-25; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131019601

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057804169.1
2 Nucleus 细胞核 0.60000 XP_057804169.1
3 Peroxisome 过氧化物酶体 0.40000 XP_057804171.1
4 Cytosol 细胞质基质 0.40000 XP_057804169.1
5 Chromosome 染色体 0.00000 XP_057804169.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:28434509 AT A 1bp_deletion frameshift_variant 69 A11,A23,A3,A8,B107,B112,B113,B119,B122,B125,B127,B128,B13,B130,B132,B136,B137,B139,B15,B17,B2,B20,B22,B28,B30,B33,B38,B39,B4,B45,B49,B52,B53,B56,B57,B63,B64,B68,B69,B70,B71,B79,B80,B89,B93,B96,C1,C11,C13,C21,C32,C34,C41,C42,C49,C53,C55,C60,C62,C65,C67,C68,C69,C76,C77,C79,C8,C84,C87
Chr4:28434519 G A EMS_canonical_SNV CDS_variant 1 C57
Chr4:28434527 CAG C 2bp_deletion frameshift_variant 152 A1,A10,A14,A15,A16,A19,A2,A20,A22,A25,A4,A5,A8,A9,B1,B100,B102,B110,B111,B114,B115,B117,B118,B12,B120,B121,B122,B124,B126,B129,B130,B131,B132,B134,B135,B138,B139,B14,B140,B15,B16,B17,B21,B22,B25,B27,B28,B29,B31,B34,B35,B36,B4,B41,B42,B43,B44,B46,B47,B48,B49,B51,B54,B55,B59,B60,B61,B62,B65,B66,B67,B7,B70,B72,B73,B75,B76,B77,B78,B79,B81,B82,B84,B86,B9,B91,B93,B95,B98,B99,C1,C10,C11,C14,C15,C16,C17,C18,C19,C21,C22,C23,C25,C29,C30,C31,C33,C35,C37,C39,C4,C43,C44,C45,C46,C47,C48,C49,C5,C52,C53,C54,C56,C58,C59,C6,C60,C65,C67,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C80,C81,C82,C84,C85,D1,D3,D4,D6,D7,D8,D9
Chr4:28434582 C T EMS_canonical_SNV CDS_variant 1 C85
Chr4:28434637 C T EMS_canonical_SNV CDS_variant 2 B91,C37
Chr4:28434719 C T EMS_canonical_SNV CDS_variant 1 B47
Chr4:28434864 C T EMS_canonical_SNV CDS_variant 2 B91,C35
Chr4:28435478 A AT 1bp_insertion frameshift_variant 6 A16,B119,B23,B69,C18,C43
Chr4:28435501 G A EMS_canonical_SNV CDS_variant 4 B125,B90,B92,C87
Chr4:28436653 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:28436722 G A EMS_canonical_SNV CDS_variant 1 C57
Chr4:28437205 G A EMS_canonical_SNV CDS_variant 2 B88,B91

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057948187.1
AATTGTAAACATCATCATCTATGTTCTATACTTTACGCACACGAAAATTCACAAAGTTAATATAATATCTCAAAGTTTTACCTCATATTCACATTTTAACTATTTTAAATTTGCTGTTAGACACGTTATTTTTAGTGTTATAGTTTAAAAAATAAAAAATAAATAAAAAATAGAGATAGTTGTTAAACTTCAACTGAAAAAAAAAAGTAGATTCTCAAGTAAGATAAACTCCAACTGAAAAAAAGTTGAAAGGCATCGAA...
XM_057948188.1
TGTTCTATACTTTACGCACACGAAAATTCACAAAGTTAATATAATATCTCAAAGTTTTACCTCATATTCACATTTTAACTATTTTAAATTTGCTGTTAGACACGTTATTTTTAGTGTTATAGTTTAAAAAATAAAAAATAAATAAAAAATAGAGATAGTTGTTAAACTTCAACTGAAAAAAAAAAGTAGATTCTCAAGTAAGATAAACTCCAACTGAAAAAAAGTTGAAAGGCATCGAAGCAAATTTATAAACAAAAGAC...

CDS

3 records

下载 CDS FASTA
LOC131019601
ATGACGGGGGTGCAGAAATCGGCGGTGCTATATCACTACCCCTGCCCCGATGGCGCCTTCGGTGCCTTGGCGGCCTACCTCTACTTCTCTCATTCTCCGGCCTTCGCTCCTCCTCTCTTCTTCCCCAACACCGTTTACTCTCCTATCAGAGCTGAGAATTTGCCCTTGAATGAAACTGATACTGTTTACCTGCTGGATTTTGTGGGGCCGCTAGGTTTCGTCGAACAGCTCTCTCGTAAAGTTGGAAGGGTTGTAGTCCT...
LOC131019601
ATGACGGGGGTGCAGAAATCGGCGGTGCTATATCACTACCCCTGCCCCGATGGCGCCTTCGGTGCCTTGGCGGCCTACCTCTACTTCTCTCATTCTCCGGCCTTCGCTCCTCCTCTCTTCTTCCCCAACACCGTTTACTCTCCTATCAGAGCTGAGAATTTGCCCTTGAATGAAACTGATACTGTTTACCTGCTGGATTTTGTGGGGCCGCTAGGTTTCGTCGAACAGCTCTCTCGTAAAGTTGGAAGGGTTGTAGTCCT...

Protein

3 records

下载 Protein FASTA
XP_057804169.1
MTGVQKSAVLYHYPCPDGAFGALAAYLYFSHSPAFAPPLFFPNTVYSPIRAENLPLNETDTVYLLDFVGPLGFVEQLSRKVGRVVVLDHHKTALEMLGSGTSSTNGNVTTVIDMDRSGATIAYDYFKEKLLAGDVNNHTNGAVTEFRRVRRLFEYIEDGDLWRWRLPNSKAFSSGLKDLNLEFDATLNPSLFQQLLSLELDSVISQGMSSLEDKQKKIEKVLELSYEITLGGGAFGNCLAVNADSIQELRSELGNELALK...
XP_057804170.1
MTGVQKSAVLYHYPCPDGAFGALAAYLYFSHSPAFAPPLFFPNTVYSPIRAENLPLNETDTVYLLDFVGPLGFVEQLSRKVGRVVVLDHHKTALEMLGSGTSSTNGNVTTVIDMDRSGATIAYDYFKEKLLAGDVNNHTNGAVTEFRRVRRLFEYIEDGDLWRWRLPNSKAFSSGLKDLNLEFDATLNPSLFQQLLSLELDSVISQGMSSLEDKQKKIEKVLELSYEITLGGGAFGNCLAVNADSIQELRSELGNELALK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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