当前解析结果
SmilChr04G001718| 统一新 Gene ID | SmilChr04G001718 |
|---|---|
| 名称 | SmilChr04G001718 |
| 描述 | uncharacterized SmilChr04G001718 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 28434296 - 28437786 / - |
| NCBI Gene ID | LOC131019601 |
|---|---|
| GeneID | 131019601 |
| locus_tag | - |
| NCBI Name | LOC131019601 |
| 原始查询 | SmilChr04G001718 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DHHA1 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:841770]; symbol=AT1G53345; hit=AT1G53345; species=arabidopsis; confidence=high |
| 产物 | DHHA1 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:841770]; symbol=AT1G53345; hit=AT1G53345; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G53345 (AT1G53345)DHHA1 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:841770] identity=51.5; qcov=1.12; evalue=1.07e-111; confidence=high |
| Rice | Os11g0167200- identity=29.7; qcov=1.12; evalue=1.23e-25; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019601 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057804169.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057804169.1 |
| 3 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057804171.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057804169.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804169.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:28434509 |
AT |
A |
1bp_deletion | frameshift_variant | 69 | A11,A23,A3,A8,B107,B112,B113,B119,B122,B125,B127,B128,B13,B130,B132,B136,B137,B139,B15,B17,B2,B20,B22,B28,B30,B33,B38,B39,B4,B45,B49,B52,B53,B56,B57,B63,B64,B68,B69,B70,B71,B79,B80,B89,B93,B96,C1,C11,C13,C21,C32,C34,C41,C42,C49,C53,C55,C60,C62,C65,C67,C68,C69,C76,C77,C79,C8,C84,C87 |
Chr4:28434519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:28434527 |
CAG |
C |
2bp_deletion | frameshift_variant | 152 | A1,A10,A14,A15,A16,A19,A2,A20,A22,A25,A4,A5,A8,A9,B1,B100,B102,B110,B111,B114,B115,B117,B118,B12,B120,B121,B122,B124,B126,B129,B130,B131,B132,B134,B135,B138,B139,B14,B140,B15,B16,B17,B21,B22,B25,B27,B28,B29,B31,B34,B35,B36,B4,B41,B42,B43,B44,B46,B47,B48,B49,B51,B54,B55,B59,B60,B61,B62,B65,B66,B67,B7,B70,B72,B73,B75,B76,B77,B78,B79,B81,B82,B84,B86,B9,B91,B93,B95,B98,B99,C1,C10,C11,C14,C15,C16,C17,C18,C19,C21,C22,C23,C25,C29,C30,C31,C33,C35,C37,C39,C4,C43,C44,C45,C46,C47,C48,C49,C5,C52,C53,C54,C56,C58,C59,C6,C60,C65,C67,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C80,C81,C82,C84,C85,D1,D3,D4,D6,D7,D8,D9 |
Chr4:28434582 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr4:28434637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C37 |
Chr4:28434719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr4:28434864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C35 |
Chr4:28435478 |
A |
AT |
1bp_insertion | frameshift_variant | 6 | A16,B119,B23,B69,C18,C43 |
Chr4:28435501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:28436653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:28436722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:28437205 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B88,B91 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。