当前解析结果
SmilChr04G001722| 统一新 Gene ID | SmilChr04G001722 |
|---|---|
| 名称 | SmilChr04G001722 |
| 描述 | uncharacterized SmilChr04G001722 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 28482472 - 28483602 / - |
| NCBI Gene ID | LOC131023236 |
|---|---|
| GeneID | 131023236 |
| locus_tag | - |
| NCBI Name | LOC131023236 |
| 原始查询 | SmilChr04G001722 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030]; symbol=AT4G29090; hit=AT4G29090; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=30.6; qcov=0.947; evalue=3.79e-31; confidence=low |
| Rice | Os01g0967700- identity=26.5; qcov=0.753; evalue=1.55e-13; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023236 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808760.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808760.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057808760.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808760.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808760.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:28482482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:28482513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,C21 |
Chr4:28482517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A25,C21 |
Chr4:28482558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B9,C17,C87 |
Chr4:28482559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A25,B83,B87,C21 |
Chr4:28482566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B87,C21,C76,D8 |
Chr4:28482585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,D8 |
Chr4:28482651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:28482653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,D10 |
Chr4:28482654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B131,C2,C37 |
Chr4:28482669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B9,C17 |
Chr4:28482706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B10,B87,C20,C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808760.1PF13966
zf-RVT 40-133 aa
PF13456
RVT_3 233-353 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808760.1 |
Pfam | PF13966 |
zf-RVT | Domain | 40 | 133 | 1.1e-16 | 61.9 | zinc-binding in reverse transcriptase |
XP_057808760.1 |
Pfam | PF13456 |
RVT_3 | Domain | 233 | 353 | 2.7e-17 | 63.5 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。