当前解析结果
SmilChr04G001725| 统一新 Gene ID | SmilChr04G001725 |
|---|---|
| 名称 | SmilChr04G001725 |
| 描述 | uncharacterized SmilChr04G001725 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 28497003 - 28503721 / + |
| NCBI Gene ID | LOC131019606 |
|---|---|
| GeneID | 131019606 |
| locus_tag | - |
| NCBI Name | LOC131019606 |
| 原始查询 | SmilChr04G001725 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tetratricopeptide repeat (TPR)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836441]; symbol=AT5G63200; hit=AT5G63200; species=arabidopsis; confidence=high |
| 产物 | tetratricopeptide repeat (TPR)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836441]; symbol=AT5G63200; hit=AT5G63200; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G63200 (AT5G63200)tetratricopeptide repeat (TPR)-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836441] identity=57.2; qcov=0.987; evalue=0; confidence=high |
| Rice | Os01g0906600- identity=53.2; qcov=0.974; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00515 (TPR_1); PF07719 (TPR_2); PF13181 (TPR_8); PF13374 (TPR_10); PF13424 (TPR_12); PF13432 (TPR_16); PF14559 (TPR_19) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019606 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057804174.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057804174.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057804175.1 |
| 4 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057804175.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804174.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:28498326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr4:28498348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr4:28498417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:28499157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:28500493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:28500535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:28501065 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A24,B22,B53,C42 |
Chr4:28501094 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B131,C2,C37 |
Chr4:28501242 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:28501867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr4:28502231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr4:28502275 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804174.1PF13181
TPR_8 148-175 aa
PF13432
TPR_16 227-269 aa
PF13181
TPR_8 237-268 aa
PF14559
TPR_19 247-307 aa
PF13181
TPR_8 360-393 aa
PF13424
TPR_12 560-621 aa
PF00515
TPR_1 561-592 aa
PF13374
TPR_10 562-589 aa
PF13181
TPR_8 564-590 aa
PF14559
TPR_19 571-625 aa
PF07719
TPR_2 593-624 aa
PF13181
TPR_8 593-624 aa
XP_057804175.1PF13181
TPR_8 148-175 aa
PF13432
TPR_16 227-269 aa
PF13181
TPR_8 237-268 aa
PF14559
TPR_19 247-307 aa
PF13181
TPR_8 360-393 aa
PF13181
TPR_8 585-602 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804174.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 148 | 175 | 5.9e-34 | 114.0 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 227 | 269 | 5.3e-14 | 53.0 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 237 | 268 | 5.9e-34 | 114.0 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF14559 |
TPR_19 | Repeat | 247 | 307 | 2.9e-14 | 53.9 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 360 | 393 | 5.9e-34 | 114.0 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 560 | 621 | 9.2e-26 | 90.6 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF00515 |
TPR_1 | Repeat | 561 | 592 | 5.2e-35 | 118.6 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF13374 |
TPR_10 | Repeat | 562 | 589 | 1e-07 | 32.4 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 564 | 590 | 5.9e-34 | 114.0 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF14559 |
TPR_19 | Repeat | 571 | 625 | 2.9e-14 | 53.9 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF07719 |
TPR_2 | Repeat | 593 | 624 | 3.2e-36 | 121.2 | Tetratricopeptide repeat |
XP_057804174.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 593 | 624 | 5.9e-34 | 114.0 | Tetratricopeptide repeat |
XP_057804175.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 148 | 175 | 1.6e-24 | 84.7 | Tetratricopeptide repeat |
XP_057804175.1 |
Pfam | PF13432 |
TPR_16 | Repeat | 227 | 269 | 2.5e-09 | 38.1 | Tetratricopeptide repeat |
XP_057804175.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 237 | 268 | 1.6e-24 | 84.7 | Tetratricopeptide repeat |
XP_057804175.1 |
Pfam | PF14559 |
TPR_19 | Repeat | 247 | 307 | 2.7e-08 | 34.7 | Tetratricopeptide repeat |
XP_057804175.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 360 | 393 | 1.6e-24 | 84.7 | Tetratricopeptide repeat |
XP_057804175.1 |
Pfam | PF13181 |
TPR_8 | Repeat | 585 | 602 | 1.6e-24 | 84.7 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。